Dear all,
I am a beginner in R and I am trying to organize my dendrogram in a better
order to vizualize our data better.
I am joining months based on the occurrence of spawning of species and would
like the plot in order of months: Nov-Dec, Jan-Feb-Mar and then Apr-May-Jun
Jul-Aug Sept-Oct
Is that possible? Kátia.
setwd("I:/UFS/Bolsas/Isaac")
data<-read.table("desmest16fev14.txt",header=T)
data
rownames(data) <-data[,1]
data <-data[,-1]
d <- vegdist(data, method = "bray")
d
clust.res<-hclust(d,method="average")
plot(clust.res,hang=-1,ylab="Bray Curtis",xlab="Mês")species Atherinella_brasiliensis Atherinella_brasiliensis
Odontesthes_argentinensis Odontesthes_argentinensis
Odontesthes_bonariensis Atherinella_brasiliensis Hirundichthys_affinis
Hirundichthys_affinis Hirundichthys_affinis Holocentrus_adscensionis
Holocentrus_adscensionis Rhizoprionodon_porosus Mustelus_fasciatus
Mustelus_fasciatus Rhizoprionodon_porosus Sphyrna_lewini Sphyrna_lewini
Carcharhinus_porosus Cetengraulis_edentulus Cetengraulis_edentulus
Cetengraulis_edentulus Sardinella_brasiliensis Sardinella_brasiliensis
Anchoviella_lepidentostole Sardinella_brasiliensis
Anchoviella_lepidentostole Anchoa_januaria Sardinella_brasiliensis
Sardinella_brasiliensis Engraulis_anchoita Lycengraulis_grossidens
Brevoortia_pectinata Chirocentrodon_bleekerianus
Anchoviella_brevirostris Anchoviella_guianensis
Anchoviella_lepidentostole Cetengraulis_edentulus Sardinella_aurita
Odontognathus_mucronatus Opisthonema_oglinum Opisthonema_oglinum
Jenynsia_lineata Mugil_liza Mugil_liza Mugil_liza
Mugil_curema Mugil_curvidens Mugil_incilis Mugil_curvidens Mugil_incilis
Mugil_curema Mugil_curema Mugil_curema Abudefduf_saxatilis
Cynoscion_jamaicensis Diplodus_argenteus_argenteus
Diplodus_argenteus_argenteus Macrodon_ancylodon Macrodon_ancylodon
Macrodon_ancylodon Macrodon_ancylodon Macrodon_ancylodon
Menticirrhus_americanus Menticirrhus_littoralis Micropogonias_furnieri
Paralonchurus_brasiliensis Micropogonias_furnieri
Paralonchurus_brasiliensis Paralonchurus_brasiliensis
Micropogonias_furnieri Peprilus_paru Istiophorus_platypterus Xiphias_gladius
Paralonchurus_brasiliensis Eucinostomus_melanopterus
Pomatomus_saltatrix Macrodon_ancylodon Pagrus_pagrus
Cynoscion_jamaicensis Katsuwonus_pelamis Macrodon_ancylodon
Menticirrhus_americanus Micropogonias_furnieri Macrodon_ancylodon
Ctenosciaena_gracilicirrhus Cynoscion_jamaicensis Cynoscion_striatus
Isopisthus_parvipinnis Stellifer_stellifer Stellifer_stellifer
Trachinotus_marginatus Trachinotus_marginatus Umbrina_canosai Umbrina_canosai
Umbrina_canosai Umbrina_canosai Trachurus_lathami Mullus_argentinae
Trichiurus_lepturus Ctenosciaena_gracilicirrhus Cynoscion_striatus
Macrodon_ancylodon Micropogonias_furnieri Umbrina_canosai Kajikia_albida
Polyprion_americanus Trachurus_lathami Macrodon_ancylodon
Diplodus_argenteus_argenteus Labrisomus_nuchipinnis Epinephelus_marginatus
Centropomus_ensiferus Cryptotomus_roseus Ctenogobius_boleosoma
Lutjanus_analis Nicholsina_usta_usta Cynoscion_acoupa
Cynoscion_microlepidotus Lutjanus_purpureus Lutjanus_purpureus
Macrodon_ancylodon Macrodon_ancylodon Macrodon_ancylodon
Macrodon_ancylodon Macrodon_ancylodon Macrodon_ancylodon
Scomberomorus_brasiliensis Micropogonias_furnieri Micropogonias_furnieri
Centropomus_undecimalis Scomberomorus_brasiliensis
Plagioscion_squamosissimus Plagioscion_surinamensis
Plagioscion_surinamensis Stellifer_naso Stellifer_naso Stellifer_naso
Stellifer_rastrifer Stellifer_rastrifer Stellifer_rastrifer
Lutjanus_purpureus Lutjanus_purpureus Lutjanus_purpureus
Lutjanus_purpureus Alphestes_afer Alphestes_afer Alphestes_afer
Alphestes_afer Rhomboplites_aurorubens Cephalopholis_fulva
Scomberomorus_maculatus Scomberomorus_maculatus Scomberomorus_maculatus
Lutjanus_purpureus Lutjanus_purpureus Elagatis_bipinnulata
Lutjanus_analis Epinephelus_morio Stellifer_rastrifer
Stellifer_stellifer Scomberomorus_brasiliensis Scomberomorus_cavalla
Eumegistus_brevorti Haemulon_plumierii Haemulon_plumierii
Lutjanus_jocu Lutjanus_purpureus Lutjanus_synagris Lutjanus_analis
Mycteroperca_bonaci Ocyurus_chrysurus Scomberomorus_brasiliensis
Scomberomorus_brasiliensis Scomberomorus_cavalla Scomberomorus_cavalla
Scomberomorus_maculatus Scomberomorus_maculatus Sparisoma_frondosum
Sparisoma_frondosum Stegastes_fuscus Stegastes_fuscus
Paralichthys_isosceles Paralichthys_triocellatus Etropus_longimanus
Symphurus_plagusia Atlantoraja_cyclophora Atlantoraja_platana
Rioraja_agassizii Rioraja_agassizii Rioraja_agassizii
Rioraja_agassizii Prionotus_nudigula Prionotus_punctatus
Scorpaena_papillosa Aspistor_luniscutis Cathorops_spixii
Cathorops_spixii Cathorops_spixii Genidens_genidens
Genidens_genidens Genidens_genidens Cathorops_spixii
Bagre_marinus Genidens_barbus Cathorops_spixii Genidens_genidens
Genidens_barbus Genidens_genidens Genidens_barbus Sciades_herzbergii
Sciades_proops Sciades_proops Sciades_parkeri Sciades_herzbergii
Bagre_marinus Sciades_herzbergii Cathorops_spixii
Aspistor_luniscutis Sciades_herzbergii Maurolicus_stehmanni
Balistes_capriscus Balistes_capriscus Sphoeroides_greeleyi
Sphoeroides_testudineus Acanthostracion_quadricornis P._brasiliensis
Jan 0 0 0 0 0 1 0 0 0
0 0 0 0 0 1 0 0 1 1
0 0 1 1 0 1 1 0 1 1
1 1 1 1 0 0 0 1 1 1
0 0 1 0 0 0 1 0 1 0
1 0 0 0 1 0 1 1 1 0
1 1 1 0 1 0 1 1 1 1
0 1 1 1 0 1 1 0 0 0
1 1 0 1 0 1 0 0 0 0
0 1 1 0 0 0 0 1 1 0
1 0 1 1 1 0 0 1 1 1
1 0 0 1 1 0 1 1 1 1
0 1 1 1 1 0 0 0 1 1
0 1 0 1 0 1 1 1 1 1
0 1 1 1 1 0 0 0 0 1
0 1 1 1 1 1 1 1 0 0
0 1 1 1 1 1 0 1 1 1
0 0 1 1 1 1 1 1 1 1
1 1 1 1 1 1 1 0 1 1
1 1 1 1 1 1 0 1 1 1
1 1 0 1 1 1 1 0 1 0
0 1 1 1 0 0 1 1 1 1
1 1 1 1 1 1 1
Feb 0 0 0 0 0 0 0 0 0
0 0 0 0 0 1 0 0 1 1
0 0 1 1 0 1 1 0 1 1
1 1 1 1 0 0 0 0 1 1
0 0 1 0 0 0 0 0 1 0
1 0 0 0 1 0 1 1 1 1
1 1 1 0 1 0 1 1 1 1
0 1 1 1 0 1 1 1 0 0
1 1 1 1 1 1 0 0 0 0
0 1 1 0 0 0 0 1 1 1
1 0 1 1 1 0 0 1 1 1
1 0 0 1 1 0 1 1 1 1
0 1 1 1 1 0 0 0 1 1
0 1 1 1 0 1 1 0 1 1
0 1 1 1 1 0 0 0 0 1
0 1 1 1 1 1 1 1 0 0
0 1 1 1 0 0 0 1 1 1
0 0 1 1 1 1 1 1 1 1
0 0 1 1 1 1 1 0 1 1
1 1 1 1 1 0 0 1 0 0
1 1 0 0 0 1 1 0 1 0
1 1 1 1 0 0 1 1 1 1
1 1 1 0 0 1 1
Mar 0 0 0 0 0 0 0 0 0
1 1 0 0 0 1 0 0 0 0
0 0 1 1 1 1 1 0 1 1
1 1 0 0 1 0 0 0 0 1
0 0 1 0 0 0 0 0 1 0
1 0 1 1 0 0 0 0 1 0
0 1 1 1 1 0 1 0 1 1
0 1 0 1 0 0 1 1 0 1
1 1 1 1 1 1 0 0 0 1
1 0 0 0 0 0 0 1 1 1
1 0 1 1 1 0 0 1 0 0
1 0 0 1 1 0 1 1 1 1
0 0 0 1 1 0 0 0 1 1
0 1 1 1 0 1 1 0 1 1
0 1 1 1 1 0 0 0 0 1
0 1 1 1 1 1 1 1 0 0
0 1 1 1 0 0 0 1 1 1
0 0 1 1 1 1 1 1 1 1
0 0 1 1 1 1 1 1 1 1
1 1 1 1 1 0 0 1 0 0
0 1 0 0 0 1 1 0 1 0
1 1 1 1 0 1 1 1 1 1
1 0 1 0 0 0 1
Apr 0 0 0 0 0 0 1 0 0
1 1 0 0 0 1 0 0 0 0
0 0 0 0 1 0 1 0 0 1
1 1 0 0 0 0 0 0 0 1
0 0 1 0 0 0 0 1 0 1
0 0 1 1 0 0 0 0 1 0
0 0 1 1 0 1 0 1 0 0
0 1 0 0 0 0 0 1 0 0
1 1 1 1 1 1 0 1 1 1
1 0 0 0 0 0 0 0 0 1
1 1 0 1 0 1 0 1 0 0
1 0 1 1 1 0 1 1 1 1
1 0 0 1 1 0 0 0 1 1
0 1 0 1 0 1 1 0 1 1
1 1 1 1 0 0 0 0 0 1
0 1 1 1 0 1 1 1 0 1
1 1 1 1 0 0 0 0 0 1
0 0 0 0 0 1 1 0 1 1
0 0 1 1 0 1 1 1 1 1
1 1 0 0 1 0 0 0 0 0
0 1 0 0 0 0 1 0 1 0
1 1 1 0 1 1 1 1 1 1
1 0 0 0 0 0 0
May 0 0 0 0 0 0 1 1 1
1 1 0 0 0 1 0 0 0 0
0 0 0 0 1 0 1 0 0 0
1 1 0 0 1 0 1 0 0 0
0 0 1 1 1 1 0 1 0 1
0 1 1 1 0 0 0 0 1 0
0 0 0 1 0 0 0 1 0 0
0 1 0 0 0 0 0 1 0 0
0 1 1 1 1 1 0 1 1 0
0 0 0 0 0 0 0 0 0 0
1 1 0 1 0 1 0 1 0 0
1 0 1 1 1 1 1 1 1 1
1 0 1 1 1 0 0 0 1 0
1 0 0 1 0 1 1 1 1 1
1 1 1 0 0 0 0 0 0 1
0 0 0 0 0 0 1 0 0 0
0 1 1 1 0 0 0 0 0 0
0 0 0 0 0 1 1 0 1 1
0 0 1 1 0 1 1 1 1 1
1 1 0 0 1 0 0 0 0 0
0 0 0 0 0 0 0 0 0 0
1 1 1 0 1 1 0 1 0 0
1 0 0 0 0 0 0
Jun 1 1 0 0 0 0 1 1 1
1 1 0 0 0 1 0 0 0 0
0 0 0 0 0 0 1 0 0 1
1 1 0 0 0 0 0 0 0 0
1 1 1 1 1 1 0 1 0 1
0 1 1 1 0 0 0 0 0 0
1 0 0 1 0 0 0 1 0 0
1 0 0 0 0 0 0 1 0 0
0 1 0 1 1 1 0 1 1 0
0 0 0 0 0 0 0 0 0 0
1 1 0 1 0 1 0 1 0 0
1 0 1 1 1 1 1 1 1 1
1 0 1 1 1 0 0 1 1 0
1 0 0 1 0 1 1 1 1 1
1 1 1 0 0 0 0 0 0 1
1 0 0 0 0 0 1 1 1 0
0 1 1 1 1 1 1 0 0 1
1 1 0 0 0 1 1 0 1 1
0 0 1 0 0 1 1 1 1 1
1 1 0 0 1 0 0 0 0 0
0 0 0 0 0 0 0 0 0 0
1 0 0 0 0 0 0 1 0 0
1 0 0 0 0 1 0
Jul 1 1 0 0 0 0 1 0 0
1 1 0 0 0 1 1 1 0 0
0 0 0 0 0 0 1 0 1 0
1 1 0 0 0 0 0 0 0 0
1 1 1 1 1 1 0 0 0 0
0 1 1 1 0 0 0 0 0 0
1 0 0 1 0 0 0 0 0 0
1 0 0 0 0 0 0 1 1 0
0 0 1 1 1 1 0 1 0 0
0 0 0 0 0 0 0 0 0 0
0 1 1 1 1 0 1 1 0 0
1 0 1 1 1 1 1 1 1 1
0 0 1 1 1 1 1 1 1 0
1 0 0 1 0 1 1 1 1 1
0 0 0 0 0 0 0 0 0 0
1 0 0 0 0 0 0 1 1 0
0 1 1 0 1 1 1 0 0 1
1 1 0 0 0 1 1 0 1 1
0 0 1 0 0 1 1 1 1 1
1 1 0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0 0 0
1 0 0 0 0 0 0 1 0 0
1 0 0 0 0 1 0
Aug 1 1 1 1 1 0 1 0 0
1 1 0 0 0 1 1 1 0 0
0 0 0 0 0 0 1 0 0 0
1 1 0 0 0 0 0 0 0 0
1 1 1 1 1 1 0 0 0 0
0 1 1 1 0 0 1 1 0 0
1 0 0 1 0 1 1 1 0 0
1 0 0 0 1 0 0 1 1 0
0 0 1 1 1 1 0 1 0 0
0 0 0 1 1 1 1 0 0 0
0 1 1 1 1 0 1 1 0 1
1 0 1 1 1 1 1 1 1 1
0 0 0 1 1 1 1 1 1 0
1 0 0 1 1 1 1 0 1 1
0 0 0 0 0 1 1 1 1 0
1 0 0 0 0 0 0 0 1 0
0 1 1 0 1 1 1 0 0 0
1 1 0 0 0 1 1 0 1 1
0 0 1 0 0 0 1 1 1 1
1 1 0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 1 0 0
1 0 0 0 0 0 0 0 0 0
1 0 0 1 0 1 0
Sept 1 1 1 1 1 0 0 0 0
1 1 1 0 1 1 1 1 0 0
1 1 0 1 1 0 1 0 1 1
1 1 1 1 0 0 0 0 0 0
1 1 1 0 1 1 0 0 0 0
0 0 1 1 0 1 1 1 0 0
1 0 0 0 1 1 1 1 1 1
0 0 0 0 1 0 0 1 0 0
0 0 1 1 1 1 1 1 0 1
1 0 0 1 1 1 1 1 0 0
0 1 1 1 1 0 1 1 0 1
1 0 1 1 1 1 1 1 1 1
0 0 0 1 1 1 0 1 1 1
1 0 0 1 1 1 1 1 1 1
0 0 0 0 0 1 1 1 1 0
1 0 0 0 0 0 0 0 1 0
0 1 1 1 0 0 1 0 1 0
1 1 1 1 0 1 1 1 1 1
1 1 1 0 0 0 1 1 1 1
1 1 1 1 0 0 1 0 0 0
0 0 1 0 0 0 0 1 0 0
0 0 0 0 1 0 0 0 0 1
1 0 0 1 1 1 0
Oct 1 1 1 1 1 0 0 0 0
1 1 1 0 1 1 1 1 0 1
1 1 1 1 1 1 1 1 1 1
1 1 1 1 0 0 0 1 0 1
1 1 1 0 1 1 0 0 0 0
0 0 1 1 0 1 1 1 1 0
1 0 0 0 1 0 1 0 1 1
0 0 0 0 1 0 0 0 0 0
0 1 1 1 0 0 1 1 1 1
1 0 0 1 1 1 1 1 0 0
1 1 1 1 1 0 1 1 1 1
1 0 0 1 1 1 1 1 1 1
1 1 0 0 1 1 1 1 1 1
0 0 1 1 1 1 1 1 1 1
1 1 0 1 0 1 1 1 1 0
1 1 1 1 0 0 0 0 1 1
1 1 1 1 0 0 1 0 1 0
1 1 1 1 1 1 1 1 1 1
1 1 1 0 0 0 1 1 1 1
1 1 1 1 1 0 1 0 0 0
1 0 1 0 0 0 0 1 0 0
1 1 1 0 1 0 0 0 1 1
1 0 0 1 1 0 1
Nov 0 0 1 1 0 1 0 0 0
1 0 1 1 1 1 1 1 1 1
1 1 1 1 1 1 1 1 1 1
1 1 1 1 0 0 0 1 0 1
1 1 1 0 0 0 1 0 0 0
0 0 0 0 1 1 1 1 1 0
1 1 0 0 1 1 1 1 1 1
0 0 1 1 1 0 1 0 0 1
1 1 0 1 0 0 1 1 1 1
1 1 1 1 1 1 1 1 1 0
1 1 1 1 1 0 0 1 1 1
1 0 0 1 1 0 1 1 1 1
1 1 1 1 1 1 1 1 1 1
0 0 1 1 1 1 1 1 1 1
1 1 0 1 0 1 1 0 0 0
1 1 1 1 0 0 0 1 1 0
0 1 1 1 0 0 1 0 1 1
1 1 1 1 1 1 1 1 1 1
1 1 1 0 1 0 1 1 1 1
1 1 1 1 1 1 1 1 1 1
1 0 1 1 1 1 0 1 1 1
1 1 1 1 1 0 0 0 1 1
1 1 1 1 1 0 1
Dec 0 0 1 1 0 1 0 0 0
1 0 1 0 0 1 0 0 1 1
0 0 1 1 0 1 1 1 1 1
1 1 1 1 0 1 0 1 0 1
0 0 1 0 0 0 1 0 0 0
0 0 0 0 1 0 1 1 1 1
1 1 1 0 1 0 1 1 1 1
0 0 1 1 1 1 1 0 0 0
1 1 0 1 0 0 0 1 1 1
1 1 1 1 0 0 1 1 1 0
1 1 1 1 1 0 0 1 1 1
1 1 0 1 1 0 1 1 1 1
1 1 1 1 1 1 1 0 1 1
0 0 0 1 0 1 1 1 1 1
1 1 0 1 1 1 1 0 0 1
1 1 1 1 0 1 0 1 1 0
0 1 1 1 0 0 1 1 1 1
1 1 1 1 1 1 1 1 1 1
1 1 1 1 1 0 1 0 1 1
1 1 1 1 1 1 0 1 1 1
1 1 0 1 1 1 1 1 1 1
0 1 1 1 0 0 0 0 1 1
1 1 1 1 1 0 1
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