I have been struggling with this same problem. I always have to re-run. PLEASE HELP!!
I have however figured out the whole data-format issue & am now able to save grid files for use in other GIS programs after they are re-exported. On Thursday, August 15, 2013 1:32:31 AM UTC-7, Jenny Williams wrote: > > I am still trying to get my head around biomod2. I have run through the > tutorial a few times, which works really well in a linear format. > > But, I want to see the models and assess them at every part of the > process. So, I need to: > > 1: be able to re-access all the files from /.BIOMOD_DATA/ once R is closed > and all the file links are lost. > e.g myBiomodModelOut > > 2: call the summary parameters for the models e.g GLM, I can see the files > but not sure how to access them. > e.g > >myGLMs <- BIOMOD_LoadModels(myBiomodModelOut, models='GLM') > #just produces a list > >summary(myGLMs[1]) > Length Class Mode > 1 character character > #summary(GLM) doesn't work, but is the output that I am looking to find. > > 3. find the split datasets used for each of the iterations BIOMOD_Modeling > options; NbRunEval for DataSplit > > Any help or pointers in the right direction would be greatly appreciated. > FYI the vignette does not seem to work: > http://127.0.0.1:15505/library/biomod2/doc/index.html > > > ****************** > Jenny Williams > Spatial Information Scientist, GIS Unit > Herbarium, Library, Art & Archives Directorate > Royal Botanic Gardens, Kew > Richmond, TW9 3AB, UK > > Tel: +44 (0)208 332 5277 > email: jenny.w...@kew.org > <javascript:><mailto:jenny.willi...@kew.org<javascript:>> > > ****************** > > Film: The Forgotten Home of Coffee - Beyond the Gardens< > http://www.youtube.com/watch?v=-uDtytKMKpA&sns=tw> > Stories: Coffee Expedition - Ethiopia< > http://storify.com/KewGIS/coffee-expedition-ethiopia> > Kew in Harapan Rainforest Sumatra< > http://storify.com/KewGIS/kew-in-harapan-rainforest> > Articles: Seeing the wood for the trees< > http://www.kew.org/ucm/groups/public/documents/document/kppcont_060602.pdf> > > How Kew's GIS team and South East Asia botanists are working to help > conserve and restore a rainforest in Sumatra. Download a pdf of this > article here.< > http://www.kew.org/ucm/groups/public/documents/document/kppcont_060602.pdf> > > > > ________________________________ > The Royal Botanic Gardens, Kew is a non-departmental public body with > exempt charitable status, whose principal place of business is at Royal > Botanic Gardens, Kew, Richmond, Surrey TW9 3AB, United Kingdom. > > The information contained in this email and any attachments is intended > solely for the addressee(s) and may contain confidential or legally > privileged information. If you have received this message in error, please > return it immediately and permanently delete it. Do not use, copy or > disclose the information contained in this email or in any attachment. > > Any views expressed in this email do not necessarily reflect the opinions > of RBG Kew. > > Any files attached to this email have been inspected with virus detection > software by RBG Kew before transmission, however you should carry out your > own virus checks before opening any attachments. RBG Kew accepts no > liability for any loss or damage which may be caused by software viruses. > > [[alternative HTML version deleted]] > > ______________________________________________ > r-h...@r-project.org <javascript:> mailing list > https://stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting guide > http://www.R-project.org/posting-guide.html > and provide commented, minimal, self-contained, reproducible code. >
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