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DavidM.UK wrote: | Hi, | | I'm wanting to call R from Perl via the RSPerl package. However I cannot | seem to install it on my Macbook (OS X Tiger - R 2.6 - Perl 5.8.6). I try to | install the source downloaded from the sigmahat website - but it seems to | fail - when I search my system for R.pm - I can't find it? Something looks | to be going wrong with the make bits? | | Cheers | | David M | | ---- | $ R CMD INSTALL --configure-args='--with-in-perl' RSPerl* | * Installing to library '/Library/Frameworks/R.framework/Resources/library' | * Installing *source* package 'RSPerl' ... | checking for perl... /usr/bin/perl | No support for any of the Perl modules from calling Perl from R. | ***************************************************** | | Set PERL5LIB to | /Library/Frameworks/R.framework/Versions/2.6/Resources/library/RSPerl/perl | | ***************************************************** | Testing: -F/Library/Frameworks/R.framework/.. -framework R | Using '/usr/bin/perl' as the perl executable | Perl modules (no): | Adding R package to list of Perl modules to enable callbacks to R from Perl | Creating the C code for dynamically loading modules with native code for | Perl: R | modules: R; linking: | checking for gcc... gcc | checking for C compiler default output file name... a.out | checking whether the C compiler works... yes | checking whether we are cross compiling... no | checking for suffix of executables... | checking for suffix of object files... o | checking whether we are using the GNU C compiler... yes | checking whether gcc accepts -g... yes | checking for gcc option to accept ISO C89... none needed | Support R in Perl: yes | configure: creating ./config.status | config.status: creating src/Makevars | config.status: creating inst/scripts/RSPerl.csh | config.status: creating inst/scripts/RSPerl.bsh | config.status: creating src/RinPerlMakefile | config.status: creating src/Makefile.PL | config.status: creating cleanup | config.status: creating src/R.pm | config.status: creating R/perl5lib.R | making target all in RinPerlMakefile | RinPerlMakefile:5: /Library/Frameworks/R.framework/Resources/etc/Makeconf: | No such file or directory | make: *** No rule to make target That will need the architecture-specific directory, e.g. etc/i386/Makeconf or etc/ppc/Makeconf There is an updated version at ~ http://www.omegahat.org/RSPerl/RSPerl_0.92-2.tar.gz that will hopefully bypass that issue. (It is a rapid fix that may have other issues.) As for finding R.pm, use the appropriate shell script in <R-library>/RSPerl/scripts/ to set the relevant environment variables to find the Perl code, etc. Thanks for letting me know ~ D. | `/Library/Frameworks/R.framework/Resources/etc/Makeconf'. Stop. | calling make -f Makefile.perl install | make: Makefile.perl: No such file or directory | make: *** No rule to make target `Makefile.perl'. Stop. | chmod: blib/lib/R.pm: No such file or directory | Finished configuration | ** libs | ** arch - i386 | gcc -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk | -mmacosx-version-min=10.4 -std=gnu99 -no-cpp-precomp | -I/Library/Frameworks/R.framework/Resources/include | -I/Library/Frameworks/R.framework/Resources/include/i386 -I. -g -pipe | -fno-common -DPERL_DARWIN -no-cpp-precomp -fno-strict-aliasing | -I/usr/local/include | -I/System/Library/Perl/5.8.6/darwin-thread-multi-2level/CORE -DPERL_POLLUTE | -D_R_=1 -DUSE_R=1 -DUSE_TOPLEVEL_EXEC=1 -DWITH_R_IN_PERL=1 -msse3 -fPIC | -g -O2 -march=nocona -c Converters.c -o Converters.o | gcc -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk | -mmacosx-version-min=10.4 -std=gnu99 -no-cpp-precomp | -I/Library/Frameworks/R.framework/Resources/include | -I/Library/Frameworks/R.framework/Resources/include/i386 -I. -g -pipe | -fno-common -DPERL_DARWIN -no-cpp-precomp -fno-strict-aliasing | -I/usr/local/include | -I/System/Library/Perl/5.8.6/darwin-thread-multi-2level/CORE -DPERL_POLLUTE | -D_R_=1 -DUSE_R=1 -DUSE_TOPLEVEL_EXEC=1 -DWITH_R_IN_PERL=1 -msse3 -fPIC | -g -O2 -march=nocona -c ForeignReference.c -o ForeignReference.o | gcc -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk | -mmacosx-version-min=10.4 -std=gnu99 -no-cpp-precomp | -I/Library/Frameworks/R.framework/Resources/include | -I/Library/Frameworks/R.framework/Resources/include/i386 -I. -g -pipe | -fno-common -DPERL_DARWIN -no-cpp-precomp -fno-strict-aliasing | -I/usr/local/include | -I/System/Library/Perl/5.8.6/darwin-thread-multi-2level/CORE -DPERL_POLLUTE | -D_R_=1 -DUSE_R=1 -DUSE_TOPLEVEL_EXEC=1 -DWITH_R_IN_PERL=1 -msse3 -fPIC | -g -O2 -march=nocona -c GeneralConverters.c -o GeneralConverters.o | gcc -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk | -mmacosx-version-min=10.4 -std=gnu99 -no-cpp-precomp | -I/Library/Frameworks/R.framework/Resources/include | -I/Library/Frameworks/R.framework/Resources/include/i386 -I. -g -pipe | -fno-common -DPERL_DARWIN -no-cpp-precomp -fno-strict-aliasing | -I/usr/local/include | -I/System/Library/Perl/5.8.6/darwin-thread-multi-2level/CORE -DPERL_POLLUTE | -D_R_=1 -DUSE_R=1 -DUSE_TOPLEVEL_EXEC=1 -DWITH_R_IN_PERL=1 -msse3 -fPIC | -g -O2 -march=nocona -c RPerlElements.c -o RPerlElements.o | gcc -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk | -mmacosx-version-min=10.4 -std=gnu99 -no-cpp-precomp | -I/Library/Frameworks/R.framework/Resources/include | -I/Library/Frameworks/R.framework/Resources/include/i386 -I. -g -pipe | -fno-common -DPERL_DARWIN -no-cpp-precomp -fno-strict-aliasing | -I/usr/local/include | -I/System/Library/Perl/5.8.6/darwin-thread-multi-2level/CORE -DPERL_POLLUTE | -D_R_=1 -DUSE_R=1 -DUSE_TOPLEVEL_EXEC=1 -DWITH_R_IN_PERL=1 -msse3 -fPIC | -g -O2 -march=nocona -c RPerlEval.c -o RPerlEval.o | gcc -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk | -mmacosx-version-min=10.4 -std=gnu99 -no-cpp-precomp | -I/Library/Frameworks/R.framework/Resources/include | -I/Library/Frameworks/R.framework/Resources/include/i386 -I. -g -pipe | -fno-common -DPERL_DARWIN -no-cpp-precomp -fno-strict-aliasing | -I/usr/local/include | -I/System/Library/Perl/5.8.6/darwin-thread-multi-2level/CORE -DPERL_POLLUTE | -D_R_=1 -DUSE_R=1 -DUSE_TOPLEVEL_EXEC=1 -DWITH_R_IN_PERL=1 -msse3 -fPIC | -g -O2 -march=nocona -c RPerlInit.c -o RPerlInit.o | gcc -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk | -mmacosx-version-min=10.4 -std=gnu99 -no-cpp-precomp | -I/Library/Frameworks/R.framework/Resources/include | -I/Library/Frameworks/R.framework/Resources/include/i386 -I. -g -pipe | -fno-common -DPERL_DARWIN -no-cpp-precomp -fno-strict-aliasing | -I/usr/local/include | -I/System/Library/Perl/5.8.6/darwin-thread-multi-2level/CORE -DPERL_POLLUTE | -D_R_=1 -DUSE_R=1 -DUSE_TOPLEVEL_EXEC=1 -DWITH_R_IN_PERL=1 -msse3 -fPIC | -g -O2 -march=nocona -c RPerlNew.c -o RPerlNew.o | gcc -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk | -mmacosx-version-min=10.4 -std=gnu99 -no-cpp-precomp | -I/Library/Frameworks/R.framework/Resources/include | -I/Library/Frameworks/R.framework/Resources/include/i386 -I. -g -pipe | -fno-common -DPERL_DARWIN -no-cpp-precomp -fno-strict-aliasing | -I/usr/local/include | -I/System/Library/Perl/5.8.6/darwin-thread-multi-2level/CORE -DPERL_POLLUTE | -D_R_=1 -DUSE_R=1 -DUSE_TOPLEVEL_EXEC=1 -DWITH_R_IN_PERL=1 -msse3 -fPIC | -g -O2 -march=nocona -c RPerlReference.c -o RPerlReference.o | gcc -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk | -mmacosx-version-min=10.4 -std=gnu99 -no-cpp-precomp | -I/Library/Frameworks/R.framework/Resources/include | -I/Library/Frameworks/R.framework/Resources/include/i386 -I. -g -pipe | -fno-common -DPERL_DARWIN -no-cpp-precomp -fno-strict-aliasing | -I/usr/local/include | -I/System/Library/Perl/5.8.6/darwin-thread-multi-2level/CORE -DPERL_POLLUTE | -D_R_=1 -DUSE_R=1 -DUSE_TOPLEVEL_EXEC=1 -DWITH_R_IN_PERL=1 -msse3 -fPIC | -g -O2 -march=nocona -c RPerlVars.c -o RPerlVars.o | gcc -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk | -mmacosx-version-min=10.4 -std=gnu99 -no-cpp-precomp | -I/Library/Frameworks/R.framework/Resources/include | -I/Library/Frameworks/R.framework/Resources/include/i386 -I. -g -pipe | -fno-common -DPERL_DARWIN -no-cpp-precomp -fno-strict-aliasing | -I/usr/local/include | -I/System/Library/Perl/5.8.6/darwin-thread-multi-2level/CORE -DPERL_POLLUTE | -D_R_=1 -DUSE_R=1 -DUSE_TOPLEVEL_EXEC=1 -DWITH_R_IN_PERL=1 -msse3 -fPIC | -g -O2 -march=nocona -c Reflectance.c -o Reflectance.o | gcc -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk | -mmacosx-version-min=10.4 -std=gnu99 -no-cpp-precomp | -I/Library/Frameworks/R.framework/Resources/include | -I/Library/Frameworks/R.framework/Resources/include/i386 -I. -g -pipe | -fno-common -DPERL_DARWIN -no-cpp-precomp -fno-strict-aliasing | -I/usr/local/include | -I/System/Library/Perl/5.8.6/darwin-thread-multi-2level/CORE -DPERL_POLLUTE | -D_R_=1 -DUSE_R=1 -DUSE_TOPLEVEL_EXEC=1 -DWITH_R_IN_PERL=1 -msse3 -fPIC | -g -O2 -march=nocona -c UserConverters.c -o UserConverters.o | gcc -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk | -mmacosx-version-min=10.4 -std=gnu99 -no-cpp-precomp | -I/Library/Frameworks/R.framework/Resources/include | -I/Library/Frameworks/R.framework/Resources/include/i386 -I. -g -pipe | -fno-common -DPERL_DARWIN -no-cpp-precomp -fno-strict-aliasing | -I/usr/local/include | -I/System/Library/Perl/5.8.6/darwin-thread-multi-2level/CORE -DPERL_POLLUTE | -D_R_=1 -DUSE_R=1 -DUSE_TOPLEVEL_EXEC=1 -DWITH_R_IN_PERL=1 -msse3 -fPIC | -g -O2 -march=nocona -c Utils.c -o Utils.o | Utils.c: In function 'characterVectorToNullTerminatedArray': | Utils.c:35: warning: assignment discards qualifiers from pointer target type | Utils.c: In function 'characterVectorToArray': | Utils.c:78: warning: assignment discards qualifiers from pointer target type | gcc -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk | -mmacosx-version-min=10.4 -std=gnu99 -no-cpp-precomp | -I/Library/Frameworks/R.framework/Resources/include | -I/Library/Frameworks/R.framework/Resources/include/i386 -I. -g -pipe | -fno-common -DPERL_DARWIN -no-cpp-precomp -fno-strict-aliasing | -I/usr/local/include | -I/System/Library/Perl/5.8.6/darwin-thread-multi-2level/CORE -DPERL_POLLUTE | -D_R_=1 -DUSE_R=1 -DUSE_TOPLEVEL_EXEC=1 -DWITH_R_IN_PERL=1 -msse3 -fPIC | -g -O2 -march=nocona -c xsinit.c -o xsinit.o | gcc -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk | -mmacosx-version-min=10.4 -std=gnu99 -dynamiclib | -Wl,-headerpad_max_install_names -Wl,-macosx_version_min -Wl,10.4 -undefined | dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o | RSPerl.so Converters.o ForeignReference.o GeneralConverters.o | RPerlElements.o RPerlEval.o RPerlInit.o RPerlNew.o RPerlReference.o | RPerlVars.o Reflectance.o UserConverters.o Utils.o xsinit.o | -L/usr/local/lib | /System/Library/Perl/5.8.6/darwin-thread-multi-2level/auto/DynaLoader/DynaLoader.a | -L/System/Library/Perl/5.8.6/darwin-thread-multi-2level/CORE -lperl -ldl -lm | -lc -F/Library/Frameworks/R.framework/.. -framework R | ** R | ** inst | ** help | >>> Building/Updating help pages for package 'RSPerl' | Formats: text html latex example | Perl text html latex example | PerlClear text html latex example | PerlDiscard text html latex example | PerlExists text html latex example | PerlExpr text html latex example | PerlFile text html latex example | PerlGetArray text html latex example | PerlGetCode text html latex example | PerlInit text html latex example | PerlInterpreter text html latex example | PerlLength text html latex example | PerlNames text html latex example | PerlNew text html latex example | PerlNewArray text html latex example | PerlPackage text html latex example | PerlReferenceDollar text html latex example | PerlReferenceObjects text html latex example | PerlReferenceSubset text html latex example | PerlSetHash text html latex example | PerlStashInfo text html latex example | PerlTerminate text html latex example | PerlType text html latex example | PerlTypes text html latex | PerlUndef text html latex example | addConverter text html latex example | foreignReference text html latex example | getNumPerlConverters text html latex example | getPerlClasses text html latex example | getPerlDynModules text html latex example | getPerlScript text html latex example | mkRef text html latex example | parseEval text html latex example | perlInitArgs text html latex example | perlModuleLoaded text html latex example | referenceHandlerGenerator text html latex example | setPerlHandler text html latex example | ** building package indices ... | * DONE (RSPerl) | -----BEGIN PGP SIGNATURE----- Version: GnuPG v1.4.7 (Darwin) Comment: Using GnuPG with Mozilla - http://enigmail.mozdev.org iD8DBQFIOHsk9p/Jzwa2QP4RAvfOAJ4mm+L35WzZe77onXRPaTkiZfluCACfXj1J eCLIkaUxh4Th9K/l/pzF/9o= =jj4v -----END PGP SIGNATURE----- ______________________________________________ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
