Hey everyone, I have a list of genes for which I would like to get Gene Ontology profiles (i.e. what are the most common GO terms). First I had a look at topGO, but since that compares two data sets, which I don’t have, it wasn’t right for this purpose. I then found goProfiles, which seems to do exactly what I wanted, but there is one problem: the genes I have don’t all come from the same organism, so there’s no organism annotation package. Do you know of any other R package that would do the trick if I give it my list of genes and their GO terms? Or do I have to create my own annotation package and then use goProfiles?
Regards, Sarah ----- Sarah Pohl PhD student Helmholtz Centre for Infection Research eMail: sarah.p...@helmholtz-hzi.de ________________________________ Helmholtz-Zentrum für Infektionsforschung GmbH | Inhoffenstraße 7 | 38124 Braunschweig | www.helmholtz-hzi.de Das HZI ist seit 2007 zertifiziertes Mitglied im "audit berufundfamilie" Vorsitzende des Aufsichtsrates: MinDir’in Bärbel Brumme-Bothe, Bundesministerium für Bildung und Forschung Stellvertreter: MinDirig Rüdiger Eichel, Niedersächsisches Ministerium für Wissenschaft und Kultur Geschäftsführung: Prof. Dr. Dirk Heinz Gesellschaft mit beschränkter Haftung (GmbH) Sitz der Gesellschaft: Braunschweig Handelsregister: Amtsgericht Braunschweig, HRB 477 ______________________________________________ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
