Hi,
I have two data frames with time serie datamatrix. I want to pick a row X
from the first matrix and see if it correlates with row Y in the second
matrix. These are gene expression values and I probaly need to do some
scaling first, but I wonder if you have any suggestions on how to do the
correlation. A graph for each correlation would also be nice.
> head(dataH)
T0h T0.25h T0.5h T1h T2h T3h T6h T12h T24h T48h C0h C0.25h
C0.5h C1h C2h C3h C6h
NM_001001130 68 95 56 43 66 62 68 90 63 89 65 85
58 49 81 49 76
NM_001001144 0 1 4 0 1 1 1 4 1 2 1 3
1 0 6 3 0
NM_001001152 79 129 52 50 24 45 130 154 112 147 56 85
67 33 52 31 93
NM_001001160 1 1 2 0 0 1 0 0 0 1 0 1
2 4 2 1 0
NM_001001176 0 0 0 0 0 0 0 0 0 0 0 0
0 0 0 0 0
NM_001001177 1 3 2 3 0 1 1 0 2 0 1 6
4 1 3 0 0
C12h C24h C48h
NM_001001130 73 48 77
NM_001001144 1 2 1
NM_001001152 77 65 109
NM_001001160 2 1 0
NM_001001176 0 0 0
NM_001001177 3 0 2
> head(dataM)
T0h T0.25h T0.5h T1h T2h T3h T6h T12h T24h
T48h C0h C0.25h
mmu-let-7a-1-3p 450 329 395 300 469 320 245 281 300
376 166 242
mmu-let-7a-2-3p 0 0 0 0 0 0 0 0 0
0 0 0
mmu-let-7a-5p 93070 62871 65013 69714 73983 60836 49885 63788 62161
65595 48525 32111
mmu-let-7b-3p 54 14 35 15 47 7 9 13 26
50 17 15
mmu-let-7b-5p 19 16 18 25 18 16 19 16 18
42 14 8
mmu-let-7c-1-3p 0 0 0 0 0 0 0 0 0
0 0 0
C0.5h C1h C2h C3h C6h C12h C24h C48h
mmu-let-7a-1-3p 211 141 127 98 113 170 187 249
mmu-let-7a-2-3p 0 0 0 0 0 0 0 0
mmu-let-7a-5p 30148 17108 22988 27513 37940 57235 40395 38018
mmu-let-7b-3p 15 3 7 9 12 23 20 14
mmu-let-7b-5p 8 2 12 10 7 15 6 6
mmu-let-7c-1-3p 0 0 0 0 0 0 0 0
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