On 20/06/2013 09:53, Erin Hodgess wrote:
Dear R People:
I'm not sure if this is an R problem or a Centos 5 problem, but here it
goes:
It is not an R problem. Your message is garbled (don't send HTML?), but
the essence is
gcc: error trying to exec 'as': execvp: Permission denied
That is a problem with your compiler installation: it cannot execute its
assembler pass.
I'm running Rstudio from a Centos 5 server. When I try to install packages
from a non-root account, I get the following:
Sys.umask()[1] "22"> install.packages("maps")Installing package into
‘/home/erin1/R/x86_64-unknown-linux-gnu-library/3.0’
(as ‘lib’ is unspecified)trying URL
'http://cran.rstudio.com/src/contrib/maps_2.3-2.tar.gz'Content type
'application/x-gzip' length 1426362 bytes (1.4 Mb)opened
URL==================================================downloaded 1.4 Mb
* installing *source* package ‘maps’ ...** package ‘maps’ successfully
unpacked and MD5 sums checked** libs** arch - gcc -std=gnu99 -g -O2
-I/usr/local/include -L/usr/local/lib64 Gmake.c -o GmakeGmake.c: In
function ‘get_lh’:
Gmake.c:111: warning: cast from pointer to integer of different
sizeGmake.c:113: warning: cast from pointer to integer of different
sizeGmake.c: In function ‘main’:Gmake.c:211: warning: cast from
pointer to integer of different sizeGmake.c:214: warning: cast from
pointer to integer of different sizeGmake.c:217: warning: cast from
pointer to integer of different sizeGmake.c:219: warning: cast from
pointer to integer of different sizeGmake.c:221: warning: cast from
pointer to integer of different sizeGmake.c:224: warning: cast from
pointer to integer of different sizeGmake.c:227: warning: cast from
pointer to integer of different sizegcc: error trying to exec 'as':
execvp: Permission deniedmake: *** [Gmake] Error 1ERROR: compilation
failed for package ‘maps’* removing
‘/home/erin1/R/x86_64-unknown-linux-gnu-library/3.0/maps’Warning in
install.packages :
installation of package ‘maps’ had non-zero exit status
The downloaded source packages are in
‘/tmp/RtmpIF6S0R/downloaded_packages’> sessionInfo()R version 3.0.1
(2013-05-16)
Platform: x86_64-unknown-linux-gnu (64-bit)
locale:
[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
LC_TIME=en_US.UTF-8
[4] LC_COLLATE=en_US.UTF-8 LC_MONETARY=en_US.UTF-8
LC_MESSAGES=en_US.UTF-8
[7] LC_PAPER=C LC_NAME=C
LC_ADDRESS=C
[10] LC_TELEPHONE=C LC_MEASUREMENT=en_US.UTF-8
LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
loaded via a namespace (and not attached):
[1] tools_3.0.1
I've changed the permissions, and updated the umask to 022.
Any help would be much appreciated.
Sincerely,
Erin
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--
Brian D. Ripley, rip...@stats.ox.ac.uk
Professor of Applied Statistics, http://www.stats.ox.ac.uk/~ripley/
University of Oxford, Tel: +44 1865 272861 (self)
1 South Parks Road, +44 1865 272866 (PA)
Oxford OX1 3TG, UK Fax: +44 1865 272595
______________________________________________
R-help@r-project.org mailing list
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PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
