Yes, the bioconductor packages do not install through CRAN. Now that I'm remembering it, some (maybe all) of the other packages were installed by dev_tools from github.
I don't know why I was getting that "unable to move temporary installation" error for Rserve and RCurl, but today it went away and they installed. Maybe I needed to reboot, maybe Brian Ripley rewrote something, maybe it was the double rainbow over Chicago yesterday<http://chicagoist.com/2013/06/18/double_rainbow_shines_over_chicago.php>... but today it worked for those two. On Mon, Jun 17, 2013 at 5:27 PM, Ista Zahn <istaz...@gmail.com> wrote: > On Mon, Jun 17, 2013 at 6:11 PM, Gene Leynes <gleyne...@gmail.com> wrote: > > > > I should have called this "failure to install several packages" > > > > Here is the list of libraries that I can't install in 3.0.1 that I could > > install to 3.0.0 > > > > Have others had the same problem? > > > > [1] "BiocGenerics" "BiocInstaller" "gdata" "graph" > > [5] "rCharts" "RCurl" "Rgraphviz" "Rserve" > > > > Some of these are bioconductor packages--you won't be able to install > them using install.packages(). See > http://www.bioconductor.org/install/. Some (or at least one) has been > removed from CRAN (see > http://cran.r-project.org/web/packages/graph/index.html). As for the > rest, you should post the error messages so we can see what the > problem is. > > Best, > Ista > > > > > > > > On Mon, Jun 17, 2013 at 5:02 PM, Gene Leynes <gleyne...@gmail.com> > wrote: > > > > > Hello, > > > > > > I just upgraded to 3.0.1 and a bunch of packages won't install, > including > > > Rserve and RCurl > > > > > > Any hints on why? > > > > > > Thanks > > > > > > > install.packages('Rserve') > > > --- Please select a CRAN mirror for use in this session --- > > > trying URL ' > > > http://cran.case.edu/bin/windows/contrib/3.0/Rserve_0.6-8.1.zip' > > > Content type 'application/zip' length 600457 bytes (586 Kb) > > > opened URL > > > downloaded 586 Kb > > > > > > package Rserve successfully unpacked and MD5 sums checked > > > Warning: unable to move temporary installation C:\Program > > > Files\R\R-3.0.1\library\fileb6c18782cd4\Rserve to C:\Program > > > Files\R\R-3.0.1\library\Rserve > > > > > > The downloaded binary packages are in > > > C:\Users\gene\AppData\Local\Temp\RtmpMZlycb\downloaded_packages > > > > > > > sessionInfo() > > > R version 3.0.1 (2013-05-16) > > > Platform: x86_64-w64-mingw32/x64 (64-bit) > > > > > > locale: > > > [1] LC_COLLATE=English_United States.1252 > > > [2] LC_CTYPE=English_United States.1252 > > > [3] LC_MONETARY=English_United States.1252 > > > [4] LC_NUMERIC=C > > > [5] LC_TIME=English_United States.1252 > > > > > > attached base packages: > > > [1] stats graphics grDevices utils datasets methods base > > > > > > loaded via a namespace (and not attached): > > > [1] tools_3.0.1 > > > > > > > > > > > > > > [[alternative HTML version deleted]] > > > > > > ______________________________________________ > > R-help@r-project.org mailing list > > https://stat.ethz.ch/mailman/listinfo/r-help > > PLEASE do read the posting guide > http://www.R-project.org/posting-guide.html > > and provide commented, minimal, self-contained, reproducible code. > > > [[alternative HTML version deleted]]
______________________________________________ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
