Hi
I am really sorry for this probably quite simple question.
I am new to R, and I am running a pipeline that has already been made. All I
have to do is give the paths for different folders, where the pipeline can find
the files with my data.
But every time I try to run the pipeline it returns with the message, that it
cannot find the file. And I really don't know why. I have found the path by
going to the folder and finding the info about the folder, where the location
of this is stated. I copy-paste this into the source command.
The path for the folder is:
When found with the "info about the folder":
/Users/gban/Desktop/Methylation analysis/MethylationDataAnalysis
But I think it should be:
/Users/gban/Desktop/Methylation
analysis/MethylationDataAnalysis/1.Normalization_raw_data/
as it is the folder 1.Normalization_raw_data where my data are in.
I have tried both paths but it returns with this message every time:
> source('/Users/gban/Desktop/Methylation
> analysis/MethylationDataAnalysis/1.Normalization_raw_data/pipelineIlluminaMethylation.main.R')
Fejl i file(filename, "r", encoding = encoding) :
cannot open the connection
In addition: Advarselsbesked:
In file(filename, "r", encoding = encoding) :
cannot open file '/Users/gban/Desktop/Methylation
analysis/MethylationDataAnalysis/1.
450K_pipeline_Nov2012release./SRC/loadMethylumi2.R': No such file or directory
Do you have any idea why?
I know this is probably more a question of how to type the path on a mac, than
it is a question of how R works.
But I am really frustrated about this, and thought it might be possible for you
to help?
Thank you in advance, and again sorry for the quite stupid question.
Best
Gitte Brinch Andersen
E-mail: gitt...@hum-gen.au.dk
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