On Tue, May 6, 2008 at 11:11 PM, Mark Kimpel <[EMAIL PROTECTED]> wrote:
> Hard as it is for me to imagine, the ggobi windows stay open and > functional while R (in emacs) has crashed in the background after throwing > the error messages. As a perhaps naive Linux user, I thought that if a > parent process crashed any processes it spawned would crash too. I guess not > in this case. > Well running it within Emacs may explain it. We actually aren't spawning a new GGobi process - just dynamically linking the GGobi library and starting it that way. > Ubuntu currently is distributing graphviz 2.16.1 > Do you have libgvc.so.3 on your system? Michael > Thanks, > Mark > > > On Wed, May 7, 2008 at 12:14 AM, Michael Lawrence <[EMAIL PROTECTED]> > wrote: > > > > > > > On Tue, May 6, 2008 at 6:06 PM, Mark Kimpel <[EMAIL PROTECTED]> wrote: > > > > > R crashed just after the warnings were issued, but ggobi kept running > > > (if that makes sense). > > > > > > I am not sure if that makes sense; GGobi should exit when the R process > > does. > > > > I have Graphviz and Rgraphiz installed and use Rgraphviz regularly > > > without a problem, so I'm not sure why it didn't load. Mark > > > > > > > Which version of graphviz? I am not sure which version the Ubuntu binary > > expects, but this may be a binary compatibility issue. > > > > That said, I am not sure if the GraphLayout plugin is the reason for R > > crashing... > > > > > > > > > > > > > On Tue, May 6, 2008 at 4:37 PM, Michael Lawrence <[EMAIL PROTECTED]> > > > wrote: > > > > > > > > > > > > > > > On Tue, May 6, 2008 at 10:32 AM, Mark Kimpel <[EMAIL PROTECTED]> > > > > wrote: > > > > > > > > > I am running 64-bit Ubuntu 8.04 and when I invoke rggobi the > > > > > interactive > > > > > graph displays but R crashes. See my sessionInfo() and a short > > > > > example > > > > > below. Ggobi and rggobi installed without complaints. Mark > > > > > > > > > > > sessionInfo() > > > > > R version 2.7.0 Patched (2008-05-04 r45620) > > > > > x86_64-unknown-linux-gnu > > > > > > > > > > locale: > > > > > > > > > > LC_CTYPE=en_US.UTF-8;LC_NUMERIC=C;LC_TIME=en_US.UTF-8;LC_COLLATE=en_US.UTF-8;LC_MONETARY=C;LC_MESSAGES=en_US.UTF-8;LC_PAPER=en_US.UTF-8;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=en_US.UTF-8;LC_IDENTIFICATION=C > > > > > > > > > > attached base packages: > > > > > [1] stats graphics grDevices utils datasets methods > > > > > base > > > > > > > > > > other attached packages: > > > > > [1] rggobi_2.1.9 RGtk2_2.12.5-3 graph_1.18.0 > > > > > > > > > > loaded via a namespace (and not attached): > > > > > [1] cluster_1.11.10 tools_2.7.0 > > > > > > > > > > > > > > > > a <- matrix(rnorm(1000), nrow = 10) > > > > > > > > > > > g <- ggobi(a) > > > > > > > > > > ** (R:25146): CRITICAL **: Error on loading plugin library > > > > > plugins/GraphLayout/plugin.la: libgvc.so.3: cannot open shared > > > > > object file: > > > > > No such file or directory > > > > > > > > > > ** (R:25146): CRITICAL **: Error on loading plugin library > > > > > plugins/GraphLayout/plugin.la: libgvc.so.3: cannot open shared > > > > > object file: > > > > > No such file or directory > > > > > > > > > > ** (R:25146): CRITICAL **: can't locate required plugin routine > > > > > addToToolsMenu in GraphLayout > > > > > > > > > > > > > > > > > > > It's not clear to me - did R crash or did you just receive these > > > > warnings? These warnings are due to a missing graphviz, so the > > > > GraphLayout > > > > plugin fails to load. > > > > > > > > > > > > > > > > > > -- > > > > > Mark W. Kimpel MD ** Neuroinformatics ** Dept. of Psychiatry > > > > > Indiana University School of Medicine > > > > > > > > > > 15032 Hunter Court, Westfield, IN 46074 > > > > > > > > > > (317) 490-5129 Work, & Mobile & VoiceMail > > > > > (317) 663-0513 Home (no voice mail please) > > > > > > > > > > ****************************************************************** > > > > > > > > > > [[alternative HTML version deleted]] > > > > > > > > > > ______________________________________________ > > > > > R-help@r-project.org mailing list > > > > > https://stat.ethz.ch/mailman/listinfo/r-help > > > > > PLEASE do read the posting guide > > > > > http://www.R-project.org/posting-guide.html > > > > > and provide commented, minimal, self-contained, reproducible code. > > > > > > > > > > > > > > > > > > > > > > -- > > > Mark W. Kimpel MD ** Neuroinformatics ** Dept. of Psychiatry > > > Indiana University School of Medicine > > > > > > 15032 Hunter Court, Westfield, IN 46074 > > > > > > (317) 490-5129 Work, & Mobile & VoiceMail > > > (317) 663-0513 Home (no voice mail please) > > > > > > ****************************************************************** > > > > > > > > > > -- > Mark W. Kimpel MD ** Neuroinformatics ** Dept. of Psychiatry > Indiana University School of Medicine > > 15032 Hunter Court, Westfield, IN 46074 > > (317) 490-5129 Work, & Mobile & VoiceMail > (317) 663-0513 Home (no voice mail please) > > ****************************************************************** > [[alternative HTML version deleted]] ______________________________________________ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
