HI Irucka,

The situation is slightly different here.  I was under the assumption that the 
list elements sometimes had one two columns or three columns.  Here, all the 
columns are present, but some with entire rows of missing values.  Also, there 
was a mistake in the code when I updated the code.
If the real data is similar to the one posted here, I guess it should work.

temp<- structure(list(`:Bostoncitydata` = structure(list(Month = c(1L,
2L, 3L, NA), Data1 = c(1.5, 12.3, 11.4, NA), Data2 = c(9.1342,
12.31, 3.5, NA)), .Names = c("Month", "Data1", "Data2"), class = "data.frame", 
row.names = c(NA,
-4L)), `:Chicagocitydata` = structure(list(Month = c(1L, 2L,
3L, 4L, 5L, NA), Data1 = c(1.52, 12.63, 20.34, 12.83, 3.34, NA
), Data2 = c(19.41342, 13.031, 0.80021, 12.63104, 19.20021, NA
)), .Names = c("Month", "Data1", "Data2"), class = "data.frame", row.names = 
c(NA,
-6L)), `:NewYorkcitydata` = structure(list(Month = c(1L, 2L,
3L, 4L, 5L, 6L, 7L, NA), Data1 = c(NA, NA, NA, NA, NA, NA, NA,
NA), Data2 = c(3.1342, 1.31, 13.5, 1.31, 2.40021, 0.25, 26.3,
NA)), .Names = c("Month", "Data1", "Data2"), class = "data.frame", row.names = 
c(NA,
-8L)), `:Philadelphiacitydata` = structure(list(Month = c(1L,
2L, 3L, 4L, 5L, 6L, NA), Data1 = c(1.65, 11.63, 5.0434, 13.73,
3.0234, 34.209, NA), Data2 = c(2.61342, 16.331, 19.040021, 17.831,
10.1010021, 3.80742, NA)), .Names = c("Month", "Data1", "Data2"
), class = "data.frame", row.names = c(NA, -7L)), `:Atlantacitydata` = 
structure(list(
Month = c(1L, 2L, 3L, NA), Data1 = c(NA, NA, NA, NA), Data2 = c(NA,
NA, NA, NA)), .Names = c("Month", "Data1", "Data2"), class = "data.frame", 
row.names = c(NA,
-4L)), `:Baltimorecitydata` = structure(list(Month = 1:2, Data1 = c(11.325,
32.433), Data2 = c(49.71342, 52.4031)), .Names = c("Month", "Data1",
"Data2"), class = "data.frame", row.names = c(NA, -2L))), .Names = 
c(":Bostoncitydata",
":Chicagocitydata", ":NewYorkcitydata", ":Philadelphiacitydata",
":Atlantacitydata", ":Baltimorecitydata"))
temp1<-lapply(temp,function(x) {x1<-x[,colSums(is.na(x))!=nrow(x)]; 
if(is.data.frame(x1)) x1[complete.cases(x1),] else x1[complete.cases(x1)] })
# temp1<-lapply(temp1,function(x) x[is.data.frame(x)])
#3 columns subset
temp3<-temp1[lapply(temp1,length)==3]
 temp3New<-lapply(temp3,function(x) lapply(names(x)[-1], function(i) 
{x1<-cbind(x[,1],x[,i]);colnames(x1)<- c("Month",i);x1} ))
pdf("Irucka3.pdf") 
par(mfrow=c(1,2)) 
lapply(names(temp3New),function(i) lapply(temp3New[[i]],function(x) 
{plot(x[,1],x[,2],main="Seasonal Flux 
Sum",sub=paste(i,colnames(x)[2],sep="_"),xlab="Calendar Year 
Timesteps",ylab="Total Flux (kg/season)");lines(x[,1],x[,2])})) 
dev.off()

#2 columns subset
temp2<-temp1[lapply(temp1,length)==2] 
temp2New<-lapply(temp2,function(x) lapply(names(x)[-1], function(i) 
{x1<-cbind(x[,1],x[,i]);colnames(x1)<- c("Month",i);x1} )) 
 
pdf("Irucka2.pdf") 
par(mfrow=c(1,1)) 
lapply(names(temp2New),function(i) lapply(temp2New[[i]],function(x) 
{plot(x[,1],x[,2],main="Seasonal Flux 
Sum",sub=paste(i,colnames(x)[2],sep="_"),xlab="Calendar Year 
Timesteps",ylab="Total Flux (kg/season)");lines(x[,1],x[,2])})) 
dev.off()

Please let me know if there are problems.
A.K.







________________________________
From: Irucka Embry <iruc...@mail2world.com>
To: smartpink...@yahoo.com 
Cc: r-help@r-project.org 
Sent: Friday, March 8, 2013 1:15 AM
Subject: Re: [R] multiple plots and looping assistance requested (revised codes)


Hi Arun, thanks for the responses.

1) I added more data to the data set located at 
http://stackoverflow.com/questions/11548368/making-multiple-plots-in-r-from-one-textfile
 to more resemble the actual data set that I have. The example data set is 
called tempdata. I have used the most recent code suggestions for plotting on 
the example data set and I am receiving the same error message as with the full 
data set. 

I figured that the plot function is stopping at Atlantacitydata and it is not 
going further because Atlantacitydata is a blank plot.

How do I get plot to keep plotting after encountering a blank plot in a multi 
plot series?

I have looked online and I have not found an answer yet.

Attachment: Irucka2.pdf
Description: Adobe PDF document

Attachment: Irucka3.pdf
Description: Adobe PDF document

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