Hi Tasnuva, You can read Scrucca, L.; Santucci, A. and Aversa, F. (2007) "Competing risk analysis using R: an easy guide for clinicians", Bone Marrow Transplantation, 40, 381-387, and also Brock, G.; Barnes, C.; Ramirez, J. and Myers, J. (2011) "R code for calculating the competing risks estimates" (freely available on the Web). Both papers describe the package cmprsk.
Also, the packages etm and timereg compute Cumulative Incidence Functions. For the former, there's a useful vignette and for the latter, there's a paper by Scheike and Zhang (2011) "Analyzing Competing Risk Data Using the R timereg Package", Journal of Statistical Software; 38(2): i02 Regards, José Iparraguirre Chief Economist Age UK -----Original Message----- From: r-help-boun...@r-project.org [mailto:r-help-boun...@r-project.org] On Behalf Of Tasnuva Tabassum Sent: 05 February 2013 03:53 To: r-help@r-project.org Subject: [R] Calculating Cumulative Incidence Function Hello, I have a problem regarding calculation of Cumulative Incidence Function. The event of interest is failure of bone-marrow transplantation, which may occur due to relapse or death in remission. The data set that I have consists of- lifetime variable, two indicator variables-one for relapse and one for death in remission, and the other variables are donor type (having 3 categories), disease type(having 3 categories), disease stage(having 3 categories) and karnofsky score (having 2 categories). I want to create an R function for cumulative incidence function for the event (failure of bone-marrow transplantation) due to relapse (cause-1) and also for the event (failure of bone-marrow transplantation) due to death in remission (cause-2). Can anyone help me please? Tas. [[alternative HTML version deleted]] ______________________________________________ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. Wrap Up and Run 10k is back! Also, new for 2013 – 2km intergenerational walks at selected venues. So recruit a buddy, dust off the trainers and beat the winter blues by signing up now: http://www.ageuk.org.uk/10k Milton Keynes | Oxford | Sheffield | Crystal Palace | Exeter | Harewood House, Leeds | Tatton Park, Cheshire | Southampton | Coventry Age UK Improving later life http://www.ageuk.org.uk ------------------------------- Age UK is a registered charity and company limited by guarantee, (registered charity number 1128267, registered company number 6825798). Registered office: Tavis House, 1-6 Tavistock Square, London WC1H 9NA. For the purposes of promoting Age UK Insurance, Age UK is an Appointed Representative of Age UK Enterprises Limited, Age UK is an Introducer Appointed Representative of JLT Benefit Solutions Limited and Simplyhealth Access for the purposes of introducing potential annuity and health cash plans customers respectively. Age UK Enterprises Limited, JLT Benefit Solutions Limited and Simplyhealth Access are all authorised and regulated by the Financial Services Authority. ------------------------------ This email and any files transmitted with it are confidential and intended solely for the use of the individual or entity to whom they are addressed. If you receive a message in error, please advise the sender and delete immediately. Except where this email is sent in the usual course of our business, any opinions expressed in this email are those of the author and do not necessarily reflect the opinions of Age UK or its subsidiaries and associated companies. Age UK monitors all e-mail transmissions passing through its network and may block or modify mails which are deemed to be unsuitable. Age Concern England (charity number 261794) and Help the Aged (charity number 272786) and their trading and other associated companies merged on 1st April 2009. Together they have formed the Age UK Group, dedicated to improving the lives of people in later life. The three national Age Concerns in Scotland, Northern Ireland and Wales have also merged with Help the Aged in these nations to form three registered charities: Age Scotland, Age NI, Age Cymru. ______________________________________________ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
