Hi, I am new to bioconductor, trying to install KEGGSOAP package, but got
warnings() when installing and error message when trying to load the package,
can anyone suggest what went wrong?
many thanks
John
source("http://bioconductor.org/biocLite.R";)
Bioconductor version 2.11 (BiocInstaller 1.8.3), ?biocLite for help
biocLite("KEGGSOAP")
BioC_mirror: http://bioconductor.org
Using Bioconductor version 2.11 (BiocInstaller 1.8.3), R version 2.15.
Installing package(s) 'KEGGSOAP'
trying URL
'http://bioconductor.org/packages/2.11/bioc/bin/windows/contrib/2.15/KEGGSOAP_1.32.0.zip'
Content type 'application/zip' length 69037 bytes (67 Kb)
opened URL
downloaded 67 Kb
package ‘KEGGSOAP’ successfully unpacked and MD5 sums checked
The downloaded binary packages are in
       C:\Users\yzhang\AppData\Local\Temp\RtmpawAjwx\downloaded_packages
Warning message:
installed directory not writable, cannot update packages 'acepack', 'actuar',
'ada', 'ade4', 'ade4TkGUI',
 'agricolae', 'akima', 'ape', 'aplpack', 'arules', 'bitops', 'boot', 'Cairo',
'car', 'caTools', 'cba',
 'chron', 'class', 'clue', 'cluster', 'coda', 'colorspace', 'CompQuadForm',
'corpcor', 'DAAG', 'date',
 'deldir', 'descr', 'deSolve', 'devtools', 'digest', 'diptest', 'doBy',
'DoE.wrapper', 'e1071', 'effects',
 'ENmisc', 'epiR', 'eRm', 'evaluate', 'evd', 'FactoMineR', 'fArma',
'fAssets', 'fBasics', 'fdrtool',
 'fExoticOptions', 'fExtremes', 'fGarch', 'fields', 'flexclust', 'fMultivar',
'fNonlinear', 'fOptions',
 'forecast', 'foreign', 'fpc', 'fracdiff', 'fRegression', 'FrF2',
'FrF2.catlg128', 'fTrading',
 'fUnitRoots', 'gamlss', 'gamlss.data', 'gamlss.dist', 'gclus', 'gdata',
'geoR', 'GGally', 'ggm',
 'ggplot2', 'gmodels', 'gridBase', 'gWidgets', 'gWidgetstcltk', 'HH',
'Hmisc', 'httr', 'igraph',
 'igraph0', 'inline', 'ipred', 'isa2', 'JavaGD', 'JGR', 'kernlab', 'KernSmoot
[... truncated]
library(KEGGSOAP)
Loading required package: BiocGenerics
Attaching package: ‘BiocGenerics’
The following object(s) are masked from ‘package:stats’:
   xtabs
The following object(s) are masked from ‘package:base’:
   anyDuplicated, cbind, colnames, duplicated, eval, Filter, Find, get,
intersect, lapply, Map, mapply, mget, order, paste,
   pmax, pmax.int, pmin, pmin.int, Position, rbind, Reduce, rep.int,
rownames, sapply, setdiff, table, tapply, union, unique
failed to load HTTP resource
Error : .onLoad failed in loadNamespace() for 'KEGGSOAP', details:
 call: NULL
 error: 1: failed to load HTTP resource
Error: package/namespace load failed for ‘KEGGSOAP’
