Hi,
I'm trying convert plink files to gds (SNPRelate).
I have the files: baep.fam, baep.bed and baep.bim
and the program to convert data is:
setwd('C:/Silvano/Incor/Baependi/Dados Baependi/')
library(gdsfmt) # versão 0.9.10
library(SNPRelate) # versão 0.9.8
# Arquivos PLINK BED
bed.fn <- system.file("C:/Silvano/Incor/Baependi/Dados Baependi/",
"baep.bed", package="SNPRelate")
bim.fn <- system.file("C:/Silvano/Incor/Baependi/Dados Baependi/",
"baep.bim", package="SNPRelate")
fam.fn <- system.file("C:/Silvano/Incor/Baependi/Dados Baependi/",
"baep.fam", package="SNPRelate")
# Convertendo
snpgdsBED2GDS(bed.fn, fam.fn, bim.fn,
out.gdsfn="C:/Silvano/Incor/Baependi/Dados Baependi/baep.gds",
verbose=TRUE)
but isn't work. The error is:
Start snpgdsBED2GDS ...
Erro em snpgdsBED2GDS(bed.fn, fam.fn, bim.fn, out.gdsfn =
"C:/Silvano/Incor/Baependi/Dados Baependi/baep.gds", :
Cannot open the file .
What can I do? What is wrong?
Thanks,
---------------------------------------------
Silvano Cesar da Costa
Universidade Estadual de Londrina
Centro de Ciências Exatas
Departamento de Estatística
Fone: (43) 3371-4346
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