Hi everyone,
I am writing a simple script to read in a data file, search through the data
file for an exact character match for a microRNA name, subset those rows,
and aggregrate a dataframe with those subselections all in a for loop. This
is what I have so far:
#READ IN DATA
file1 = "C:/Desktop/mirtarget2_predictions.txt"
data = read.table(file1, header=FALSE, sep="\t")
colnames(data) = c("mir", "gene", "score")
data$mir = as.character(data$mir)
data$gene = as.character(data$gene)
#input miR of Interest
mirs = c("hsa-miR-146a-5p", "hsa-miR-215")
#create table of miR targets
table = data.frame(data[0,])
for(i in 1:length(mirs))
{
holder = subset(data, data$mir==mirs[i])
table = holder
}
The problem is that each time the loop runs, table is being overwritten by
holder, and I can't create something like
table[i,] = holder because length of i is equal to 2. Probably an easy
solution but I am overthinking it at this point.
Thanks in advance.
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