Thanks, Prof. Ripley.
Using deparse(b$formula, width.cutoff = options()$width) works as I'd
expected (full example below). So I can use that to write a custom
summary.gam(), though that still seems like a lot of work to get
summary(b) to follow the usual R output conventions.
Sarah
library(mgcv)
# start with example from ?gam
set.seed(2) ## simulate some data...
dat <- gamSim(1,n=400,dist="normal",scale=2)
colnames(dat)[1:5] <- c("reallylongnamey", "reallylongnamex0",
"reallylongnamex1", "reallylongnamex2", "reallylongnamex3")
b <-
gam(reallylongnamey~s(reallylongnamex0)+s(reallylongnamex1)+s(reallylongnamex2)+s(reallylongnamex3),data=dat)
options(width=20)
deparse(b$formula, width.cutoff = options()$width) # not wrapped to 20
characters
options(width=150)
deparse(b$formula, width.cutoff = options()$width) # the formula is
wrapped even though it fits in the specified width
On Tue, Nov 6, 2012 at 12:37 PM, Prof Brian Ripley
<rip...@stats.ox.ac.uk> wrote:
> On 06/11/2012 17:01, Sarah Goslee wrote:
>>
>> Hi all,
>>
>> I'm working with summary.gam() and noticed that the options()$width
>> argument is ignored by some components of that function, in particular
>> the formula, which is printed at an arbitrary length regardless of the
>> desired width.
>>
>> I've tracked the problem back to print.formula(), so at a lower level
>> than summary.gam(). Is there a way around this that I'm missing?
>
>
> Use deparse(): print() on a language type uses (at C level) deparse with the
> default width.cutoff of 60. E.g. (subject to vagaries of mailers)
>
>> form <-
>> reallylongnamey~reallylongnamex0+reallylongnamex1+reallylongnamex2+reallylongnamex3
>> form
> reallylongnamey ~ reallylongnamex0 + reallylongnamex1 + reallylongnamex2 +
> reallylongnamex3
>> deparse(form, 150)
> [1] "reallylongnamey ~ reallylongnamex0 + reallylongnamex1 +
> reallylongnamex2 + reallylongnamex3"
>
> I am not sure this is something we would want to make depend on
> getOption("width"), but it might merit a separate option.
>
>>
>> library(mgcv)
>> # start with example from ?gam
>> set.seed(2) ## simulate some data...
>> dat <- gamSim(1,n=400,dist="normal",scale=2)
>>
>>
>> colnames(dat)[1:5] <- c("reallylongnamey", "reallylongnamex0",
>> "reallylongnamex1", "reallylongnamex2", "reallylongnamex3")
>> b <-
>> gam(reallylongnamey~s(reallylongnamex0)+s(reallylongnamex1)+s(reallylongnamex2)+s(reallylongnamex3),data=dat)
>>
>> options(width=20)
>> b$formula # not wrapped to 20 characters
>>
>> options(width=150)
>> b$formula # the formula is wrapped even though it fits in the specified
>> width
>>
>> # also true for lm()
>> b <-
>> lm(reallylongnamey~reallylongnamex0+reallylongnamex1+reallylongnamex2+reallylongnamex3,data=dat)
>>
>> options(width=20)
>> b$call
>>
>> options(width=150)
>> b$call
>>
>>
>> Thanks,
>> Sarah
--
Sarah Goslee
http://www.functionaldiversity.org
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