Greetings all,
I'm trying to install the msm package and it is failing on compilation. The
problem seems to be the analyticp component? Any advice on how to get it to
work?
error message is below. I'm running R version 2.6.2 (2008-02-08)
x86_64-redhat-linux-gnu on a dell precision 690 with Fedora Core 8.
Thanks,
Adam
> install.packages("msm",lib="/usr/lib64/R/library")
trying URL 'http://cran.mirrors.hoobly.com/src/contrib/msm_0.8.tar.gz'
Content type 'application/x-tar' length 577213 bytes (563 Kb)
opened URL
==================================================
downloaded 563 Kb
* Installing *source* package 'msm' ...
** libs
gcc -m64 -std=gnu99 -I/usr/include/R -I/usr/include/R
-I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2
-fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic
-c analyticp.c -o analyticp.o
In file included from analyticp.c:9:
msm.h:3:15: error: R.h: No such file or directory
msm.h:4:26: error: R_ext/Applic.h: No such file or directory
analyticp.c: In function 'AnalyticP':
analyticp.c:51: warning: implicit declaration of function 'Calloc'
analyticp.c:51: error: expected expression before 'double'
analyticp.c:51: warning: cast to pointer from integer of different size
analyticp.c:52: error: expected expression before 'double'
analyticp.c:52: warning: cast to pointer from integer of different size
analyticp.c:63: warning: implicit declaration of function 'error'
analyticp.c:91: warning: implicit declaration of function 'Free'
make: *** [analyticp.o] Error 1
ERROR: compilation failed for package 'msm'
** Removing '/usr/lib64/R/library/msm'
The downloaded packages are in
/tmp/RtmpaoUZiC/downloaded_packages
Updating HTML index of packages in '.Library'
Warning messages:
1: In install.packages("msm", lib = "/usr/lib64/R/library") :
installation of package 'msm' had non-zero exit status
2: In tools:::unix.packages.html(.Library) :
cannot create HTML package index
>
--
Adam Wilson
http://hydrodictyon.eeb.uconn.edu/people/wilson/
Department of Ecology and Evolutionary Biology
BioPharm 223
University of Connecticut
Tel: 860.486.4157
[EMAIL PROTECTED]
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