If you provide some example data in reproducible code, I might be able to
help. Otherwise, not much I can do.
Jean
JIMonroe <jim...@virginia.edu> wrote on 10/08/2012 01:17:55 AM:
>
> Jean,
>
> It's definitely bigger now, but my axes are cut-off. As in your
example, I
> had them drawn after generating the heatmap, but the image does not seem
to
> be centered. I think even part of the heatmap is getting cut off, which
> wasn't happening until I explicitly set the width and height of the pdf.
> Here is my code
>
> > pdf("Apo_Mut_Boot.pdf", width=200, height=200)
> > heatmap(x=as.matrix((Apo_Mut)), col =
> > colorRampPalette(c("white","black"))(256),
> > zlim=c(min(Apo_Mut),max(Apo_Mut)), add = FALSE, xaxs = "i", yaxs =
> > "i",xaxt= "n", yaxt = "n", xlab="residue", ylab="residue",
> > main="Apo-Mutant",revC=TRUE, Rowv = as.dendrogram(blah2), Colv =
> > as.dendrogram(blah2), reorderfun = function(d,w) rev(reorder(d,w)),
> > oldstyle = FALSE,cexRow=0.01,cexCol=0.01,symm=TRUE )
> > axis(1, at=1:919, labels=RowCol, las=2, cex=0.01)
> > axis(4, at=1:919, labels=RowCol, las=2, cex=0.01)
> > box()
> > graphics.off()
>
> Jacob
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