?ylim says "numeric vectors of length 2" - so just the beginning and end.
?svyhist doesn't specifically mention the ylim parameter, meaning you should look for a "..." in the arguments list and click through to the page for ?hist ?hist has an example that shows the ylim parameter only containing the beginning and end values. try using ylim = c( 0 , 0.030 ) if you're looking to set the tick marks, look at ?axis ;) On Fri, Oct 5, 2012 at 11:18 PM, Muhuri, Pradip (SAMHSA/CBHSQ) < pradip.muh...@samhsa.hhs.gov> wrote: > Dear Anthony and David, > > Sorry- the earlier-sent plots were mislabeled, which I have corrected and > attached. But, the y-lim issue is yet to be resolved. > > Thanks, > > Pradip Muhuri > > > ________________________________________ > From: Anthony Damico [ajdam...@gmail.com] > Sent: Friday, October 05, 2012 7:29 PM > To: David Winsemius > Cc: Muhuri, Pradip (SAMHSA/CBHSQ); R help > Subject: Re: [R] svyhist > > this worked for me -- and doesn't require removing the PSUs from the > design :) > > options( survey.lonely.psu = "adjust" ) > svyhist (~dthage, > subset (nhis, xspd2=='No SPD'), breaks=MyBreaks, main= " ", > col="grey80", > xlab="Age at Death Distribution" > ) > lines (svysmooth(~dthage, bandwidth=5,subset(nhis, xspd2=='No SPD')), > lwd=2) > > > Dr. Lumley has written quite a bit about single-PSU strata here: > http://faculty.washington.edu/tlumley/survey/exmample-lonely.html > > > > On Fri, Oct 5, 2012 at 7:16 PM, David Winsemius <dwinsem...@comcast.net > <mailto:dwinsem...@comcast.net>> wrote: > > On Oct 5, 2012, at 3:33 PM, Muhuri, Pradip (SAMHSA/CBHSQ) wrote: > > > Hello, > > > > I was trying to draw histograms of age at death and got the following > 2 error messages: > > > > > > 1) Error in tapply(1:NROW(x), list(factor(strata)), function(index) { : > > > > arguments must have same length > > This is the top of the output of str applied to the data argument you > offered to svyhist: > > > > str(subset (nhis, xspd2==2) ) > List of 9 > $ cluster :'data.frame': 0 obs. of 1 variable: > ..$ psu: Factor w/ 47 levels "109.1","115.2",..: > ..- attr(*, "terms")=Classes 'terms', 'formula' length 2 ~psu > .. .. ..- attr(*, "variables")= language list(psu) > .. .. ..- attr(*, "factors")= int [1, 1] 1 > .. .. .. ..- attr(*, "dimnames")=List of 2 > .. .. .. .. ..$ : chr "psu" > .. .. .. .. ..$ : chr "psu" > > At least one problem seems pretty clear. No data. That can be corrected by > wrapping as.numeric() around the factor on which you are subsetting in two > places. > > Another problem may arise when you restrict to one class only, namely > there won't any "design" to work with. All the clusters .... there would be > only one .... no longer have any multiplicity, and svyhist apparently > isn't built to handle situation, at least with that design argument. > > Error in onestrat(x[index, , drop = FALSE], clusters[index], > nPSU[index][1], : > Stratum (2) has only one PSU at stage 1 > > Taking the 'stratum' argument out of the design() spec allows it to > proceed, but I do not know if that is introducing invalidity in the > analysis. > -- > David. > > > > > > > 2) Error in findInterval(mm[, i], gx) : 'vec' contains NAs > > > > In addition: Warning messages: > > > > 1: In min(x) : no non-missing arguments to min; returning Inf > > > > 2: In max(x) : no non-missing arguments to max; returning -Inf > > > > > > > > I would appreciate if someone could help me resolve these issues. > > > > > > > > Below is reproducible example. > > > > Thanks, > > > > Pradip Muhuri > > > > > > > > setwd ("E:/RDATA") > > options(width = 120) > > library (survey) > > library (KernSmooth) > > xd1 <- > > "dthage ypll_75 xspd2 psu stratum wt8 > > 56 19 2 2 33 1512.7287 > > 86 0 2 2 129 1830.6400 > > 81 0 2 1 67 536.1400 > > 47 28 2 1 17 519.8350 > > 71 4 1 1 225 254.4087 > > 72 3 1 1 238 424.4787 > > 75 0 2 2 115 407.0987 > > 83 0 2 2 46 622.5137 > > 79 -4 2 1 300 509.1212 > > 78 -3 2 1 133 517.3325 > > 71 4 2 2 328 1179.3063 > > 64 11 2 1 2 301.5250 > > 78 -3 2 1 62 253.9025 > > 65 10 2 2 260 932.6575 > > 75 0 2 1 247 145.5900 > > 63 12 2 2 156 247.0650 > > 71 4 2 1 146 829.4787 > > 76 -1 2 2 234 432.5437 > > 76 0 2 1 109 859.6888 > > 68 7 2 1 228 1236.2975 > > 64 11 2 2 167 347.5788 > > 62 13 2 2 312 354.0500 > > 77 0 2 2 275 882.1938 > > 78 -3 2 1 28 481.5975 > > 81 0 2 1 180 1285.5425 > > 79 0 2 2 205 576.0000 > > 70 5 2 1 173 128.3725 > > 75 0 2 2 189 359.3863 > > 78 0 2 1 332 512.8062 > > 74 1 2 2 14 449.0800 > > 77 0 2 1 242 283.0013 > > 92 0 2 1 152 915.3200 > > 69 6 2 2 217 672.7663 > > 53 22 2 1 290 1430.8812 > > 81 0 2 2 90 699.1075 > > 67 8 2 2 316 607.6500 > > 85 0 2 1 171 312.9850 > > 93 0 2 2 119 936.1275 > > 82 0 2 1 118 186.4450 > > 71 4 2 2 329 729.1213 > > 43 32 2 1 215 887.6313 > > 74 1 2 1 180 569.9338 > > 89 0 2 1 324 1054.0887 > > 81 0 2 2 47 532.0987 > > 70 5 2 1 53 450.8750 > > 75 0 1 1 38 557.9750 > > 56 19 2 1 17 512.6363 > > 90 0 2 2 29 569.7888 > > 70 5 2 1 251 554.2138 > > 56 19 2 2 14 1114.1762" > > tor <- read.table (textConnection(xd1), header=TRUE, sep='', as.is< > http://as.is>=TRUE) > > > > > > # Grouping variable (xspd) to be factor > > tor <- within(tor, { > > xspd2 <- factor(xspd2,levels=c (1,2), > > labels=c('SPD', 'No SPD'), ordered=TRUE) > > } > > ) > > # object with survey design variables and data > > nhis <- svydesign (id=~psu,strat=~stratum, weights=~wt8, data=tor, > nest=TRUE) > > > > MyBreaks <- c(18,35,45,55,65,75,85,95) > > > > png("svyhist_age_at_death.png") > > > > svyhist (~dthage, > > subset (nhis, xspd2==2), breaks=MyBreaks, main= " ", > > col="grey80", > > xlab="Age at Death Distribution" > > ) > > lines (svysmooth(~dthage, bandwidth=5,subset(nhis, xspd2==2)), lwd=2) > > > > dev.off () > > > > > > > > > > > > > > Pradip K. Muhuri > > Statistician > > Substance Abuse & Mental Health Services Administration > > The Center for Behavioral Health Statistics and Quality > > Division of Population Surveys > > 1 Choke Cherry Road, Room 2-1071 > > Rockville, MD 20857 > > > > Tel: 240-276-1070 > > Fax: 240-276-1260 > > e-mail: pradip.muh...@samhsa.hhs.gov<mailto:pradip.muh...@samhsa.hhs.gov > ><mailto:pradip.muh...@samhsa.hhs.gov<mailto:pradip.muh...@samhsa.hhs.gov > >> > > > > The Center for Behavioral Health Statistics and Quality your feedback. > Please click on the following link to complete a brief customer survey: > http://cbhsqsurvey.samhsa.gov<http://cbhsqsurvey.samhsa.gov/> > > > > > > [[alternative HTML version deleted]] > > > > ______________________________________________ > > R-help@r-project.org<mailto:R-help@r-project.org> mailing list > > https://stat.ethz.ch/mailman/listinfo/r-help > > PLEASE do read the posting guide > http://www.R-project.org/posting-guide.html > > and provide commented, minimal, self-contained, reproducible code. > > David Winsemius, MD > Alameda, CA, USA > > ______________________________________________ > R-help@r-project.org<mailto:R-help@r-project.org> mailing list > https://stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting guide > http://www.R-project.org/posting-guide.html > and provide commented, minimal, self-contained, reproducible code. > > [[alternative HTML version deleted]] ______________________________________________ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
