To whom it may concern.
As I would like to analyse some array data I was keen on downloading the
lumi package that depends obviously on hdrcde that is not available for r
2.12.1. I did not find instructions to solve or circumvent this problem.
Installing hdrcde by hand did not work either. It was not detected by
> (.packages(all.available=TRUE))
if installed in the R library.
Thanks
Hermann Norpois
This was my try to install the lumi package:
> source ("http://bioconductur.org/biocLite.R";)
Fehler in file(filenaReme, "r", encoding = encoding) :
kann Verbindung nicht öffnen
Zusätzlich: Warnmeldung:
In file(filename, "r", encoding = encoding) :
kann 'bioconductur.org' nicht auflösen
> source ("http://bioconductor.org/biocLite.R";)
BiocInstaller version 1.2.1, ?biocLite for help
> biocLite("lumi")
BioC_mirror: 'http://www.bioconductor.org'
Using R version 2.14, BiocInstaller version 1.2.1.
Installing package(s) 'lumi'
Installing package(s) into /home/hnorpois/R/i686-pc-
linux-gnu-library/2.14
(as lib is unspecified)
Warnung: dependency hdrcde is not available
versuche URL '
http://www.bioconductor.org/packages/2.9/bioc/src/contrib/lumi_2.6.0.tar.gz'
Content type 'application/x-gzip' length 11386679 bytes (10.9 Mb)
URL geöffnet
==================================================
downloaded 10.9 Mb
ERROR: dependency hdrcde is not available for package lumi
* removing /home/hnorpois/R/i686-pc-linux-gnu-library/2.14/lumi
The downloaded packages are in
/tmp/RtmpMNrvTz/downloaded_packages
Warnmeldungen:
1: In install.packages(pkgs = pkgs, repos = repos, ...) :
installation of package lumi had non-zero exit status
2: 'rgl' cannot be updated, installed directory '/usr/lib/R/site-library'
not
writeable
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