Dear all,
Following the advice of David Winsemius, I've restarted my R session : I was
able to load rgl library (rgl_0.92.892) ....
Sorry to have bothered you.
Next time, I'll include this step before submitting to R-help ;).
Anyway, thanks for support.
Bests,
=============
> library(rgl)
> sessionInfo()
R version 2.15.1 (2012-06-22)
Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit)
locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
attached base packages:
[1] stats graphics grDevices datasets utils methods base
other attached packages:
[1] rgl_0.92.892 fortunes_1.5-0 snowfall_1.84 snow_0.3-9
Le Jul 27, 2012 à 3:48 AM, David Winsemius a écrit :
>
> On Jul 26, 2012, at 4:46 AM, Guillaume Meurice wrote:
>
>> Dear all,
>>
>> I was willing to use the library "rgl" to plot some 3D graphics, but
>> unfortunately, I wan't able to instal the library. The error message is
>> below.
>>
>> I would be very grateful if you could give me any clues about how I can
>> solve this.
>>
>>
>> Below you will find :
>> - installation from binaries
>> - installation from sources
>> - sessionInfo()
>>
>
> The error messages in the"sources" install dialog suggests a problem with
> your system installation of freetype. I was running rgl v0.92.861 on Leopard
> without problems. I just tried installing the current version offered to the
> GUI installer, v0.92.880, restarting and got an error on attempting to load
> while in version 2.14.2,
>
> After updating R to the current version I am able to install rgl_0.92.892
> from binary using the GUI Package Installer and then load and run code in
> either R64 or 32-bit R.
>
> > sessionInfo()
> R version 2.15.1 (2012-06-22)
> Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit)
>
> locale:
> [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
>
> attached base packages:
> [1] stats grDevices utils datasets graphics methods base
>
> other attached packages:
> [1] rgl_0.92.892 lattice_0.20-6
>
> loaded via a namespace (and not attached):
> [1] grid_2.15.1 tools_2.15.1
>
>
> You have a fairly full system. I wonder if you should restart and try with a
> few less packages?
>
> And as Duncan suggested, you _should_ be posting on the R-SIG-Mac list.
>
> --
> David.
>> Bests,
>> --
>> Guillaume Meurice - PhD
>> Plateforme de Bioinformatique
>>
>> Here is the installation from binaries :
>> =======================
>>> install.packages("rgl")
>> trying URL
>> 'http://mirror.ibcp.fr/pub/CRAN/bin/macosx/leopard/contrib/2.15/rgl_0.92.892.tgz'
>> Content type 'application/x-gzip' length 7774197 bytes (7.4 Mb)
>> opened URL
>> ==================================================
>> downloaded 7.4 Mb
>>
>>
>> The downloaded binary packages are in
>>
>> /var/folders/20/20puJrE0FrWErlnMP5nP6E+++TI/-Tmp-//RtmplpCNL5/downloaded_packages
>>> library(rgl)
>> Error in get(Info[i, 1], envir = env) :
>> internal error -3 in R_decompress1
>> Error: package/namespace load failed for rgl
>> =======================
>>
>>
>>
>>
>> Here is the installation from sources :
>> =======================
>>> install.packages("rgl", type="source")
>> trying URL 'http://mirror.ibcp.fr/pub/CRAN/src/contrib/rgl_0.92.892.tar.gz'
>> Content type 'application/x-gzip' length 1713881 bytes (1.6 Mb)
>> opened URL
>> ==================================================
>> downloaded 1.6 Mb
>>
>> =================================================
>> Setting G.Meurice environment for useful day work
>>
>> ### Sourcing some useful stuff
>> - ugf.exp.utils.IO.R
>> - cqFea4CGH.R
>> - cqFea4GE.R
>> - cqFea4miRNA.R
>> - cqFea4CH3.R
>>
>> Loading required package: snow
>> Loading required package: utils
>> ### Defining Global Variables
>> - dir.arraydesign : directory to agilent array design
>> - dir.svn : directory to local svn repository
>>
>>
>> ### Hooooooooommmmmmmmm
>> It's interesting that SAS Institute feels that non-peer-reviewed software
>> with
>> hidden implementations of analytic methods that cannot be reproduced by
>> others
>> should be trusted when building aircraft engines.
>> -- Frank Harrell (in response to the statement of the SAS director of
>> technology product marketing: "We have customers who build engines for
>> aircraft. I am happy they are not using freeware when I get on a jet.")
>> R-help (January 2009)
>>
>>
>>
>>
>> Now it's time to work
>> =================================================
>> * installing *source* package rgl ...
>> ** package rgl successfully unpacked and MD5 sums checked
>> checking for gcc... gcc -arch x86_64 -std=gnu99
>> checking whether the C compiler works... yes
>> checking for C compiler default output file name... a.out
>> checking for suffix of executables... checking whether we are cross
>> compiling... no
>> checking for suffix of object files... o
>> checking whether we are using the GNU C compiler... yes
>> checking whether gcc -arch x86_64 -std=gnu99 accepts -g... yes
>> checking for gcc -arch x86_64 -std=gnu99 option to accept ISO C89... none
>> needed
>> checking how to run the C preprocessor... gcc -arch x86_64 -std=gnu99 -E
>> checking for gcc... (cached) gcc -arch x86_64 -std=gnu99
>> checking whether we are using the GNU C compiler... (cached) yes
>> checking whether gcc -arch x86_64 -std=gnu99 accepts -g... (cached) yes
>> checking for gcc -arch x86_64 -std=gnu99 option to accept ISO C89...
>> (cached) none needed
>> checking for libpng-config... no
>> checking libpng... checking for grep that handles long lines and -e...
>> /usr/bin/grep
>> checking for egrep... /usr/bin/grep -E
>> checking for ANSI C header files... rm: conftest.dSYM: is a directory
>> rm: conftest.dSYM: is a directory
>> yes
>> checking for sys/types.h... yes
>> checking for sys/stat.h... yes
>> checking for stdlib.h... yes
>> checking for string.h... yes
>> checking for memory.h... yes
>> checking for strings.h... yes
>> checking for inttypes.h... yes
>> checking for stdint.h... yes
>> checking for unistd.h... yes
>> checking png.h usability... no
>> checking png.h presence... no
>> checking for png.h... no
>> checking for png_read_update_info in -lpng... no
>> configure: libpng header and lib found
>> configure: using libpng dynamic linkage
>> checking for X... libraries /usr/X11/lib, headers
>> checking for glEnd in -lGL... yes
>> checking for gluProject in -lGLU... yes
>> checking for freetype-config... no
>> configure: creating ./config.status
>> config.status: creating src/Makevars
>> ** libs
>> *** arch - x86_64
>> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
>> -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG
>> -I/System/Library/Frameworks/OpenGL.framework/Headers -DHAVE_PNG_H -DDarwin
>> -DNO_GL_PREFIX -I/usr/X11R6/include -Iext -I/usr/local/include -g -O2
>> -fPIC -g -O2 -c ABCLineSet.cpp -o ABCLineSet.o
>> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
>> -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG
>> -I/System/Library/Frameworks/OpenGL.framework/Headers -DHAVE_PNG_H -DDarwin
>> -DNO_GL_PREFIX -I/usr/X11R6/include -Iext -I/usr/local/include -g -O2
>> -fPIC -g -O2 -c BBoxDeco.cpp -o BBoxDeco.o
>> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
>> -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG
>> -I/System/Library/Frameworks/OpenGL.framework/Headers -DHAVE_PNG_H -DDarwin
>> -DNO_GL_PREFIX -I/usr/X11R6/include -Iext -I/usr/local/include -g -O2
>> -fPIC -g -O2 -c Background.cpp -o Background.o
>> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
>> -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG
>> -I/System/Library/Frameworks/OpenGL.framework/Headers -DHAVE_PNG_H -DDarwin
>> -DNO_GL_PREFIX -I/usr/X11R6/include -Iext -I/usr/local/include -g -O2
>> -fPIC -g -O2 -c Color.cpp -o Color.o
>> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
>> -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG
>> -I/System/Library/Frameworks/OpenGL.framework/Headers -DHAVE_PNG_H -DDarwin
>> -DNO_GL_PREFIX -I/usr/X11R6/include -Iext -I/usr/local/include -g -O2
>> -fPIC -g -O2 -c Disposable.cpp -o Disposable.o
>> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
>> -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG
>> -I/System/Library/Frameworks/OpenGL.framework/Headers -DHAVE_PNG_H -DDarwin
>> -DNO_GL_PREFIX -I/usr/X11R6/include -Iext -I/usr/local/include -g -O2
>> -fPIC -g -O2 -c Light.cpp -o Light.o
>> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
>> -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG
>> -I/System/Library/Frameworks/OpenGL.framework/Headers -DHAVE_PNG_H -DDarwin
>> -DNO_GL_PREFIX -I/usr/X11R6/include -Iext -I/usr/local/include -g -O2
>> -fPIC -g -O2 -c LineSet.cpp -o LineSet.o
>> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
>> -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG
>> -I/System/Library/Frameworks/OpenGL.framework/Headers -DHAVE_PNG_H -DDarwin
>> -DNO_GL_PREFIX -I/usr/X11R6/include -Iext -I/usr/local/include -g -O2
>> -fPIC -g -O2 -c LineStripSet.cpp -o LineStripSet.o
>> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
>> -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG
>> -I/System/Library/Frameworks/OpenGL.framework/Headers -DHAVE_PNG_H -DDarwin
>> -DNO_GL_PREFIX -I/usr/X11R6/include -Iext -I/usr/local/include -g -O2
>> -fPIC -g -O2 -c Material.cpp -o Material.o
>> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
>> -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG
>> -I/System/Library/Frameworks/OpenGL.framework/Headers -DHAVE_PNG_H -DDarwin
>> -DNO_GL_PREFIX -I/usr/X11R6/include -Iext -I/usr/local/include -g -O2
>> -fPIC -g -O2 -c PlaneSet.cpp -o PlaneSet.o
>> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
>> -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG
>> -I/System/Library/Frameworks/OpenGL.framework/Headers -DHAVE_PNG_H -DDarwin
>> -DNO_GL_PREFIX -I/usr/X11R6/include -Iext -I/usr/local/include -g -O2
>> -fPIC -g -O2 -c PointSet.cpp -o PointSet.o
>> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
>> -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG
>> -I/System/Library/Frameworks/OpenGL.framework/Headers -DHAVE_PNG_H -DDarwin
>> -DNO_GL_PREFIX -I/usr/X11R6/include -Iext -I/usr/local/include -g -O2
>> -fPIC -g -O2 -c PrimitiveSet.cpp -o PrimitiveSet.o
>> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
>> -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG
>> -I/System/Library/Frameworks/OpenGL.framework/Headers -DHAVE_PNG_H -DDarwin
>> -DNO_GL_PREFIX -I/usr/X11R6/include -Iext -I/usr/local/include -g -O2
>> -fPIC -g -O2 -c QuadSet.cpp -o QuadSet.o
>> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
>> -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG
>> -I/System/Library/Frameworks/OpenGL.framework/Headers -DHAVE_PNG_H -DDarwin
>> -DNO_GL_PREFIX -I/usr/X11R6/include -Iext -I/usr/local/include -g -O2
>> -fPIC -g -O2 -c RenderContext.cpp -o RenderContext.o
>> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
>> -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG
>> -I/System/Library/Frameworks/OpenGL.framework/Headers -DHAVE_PNG_H -DDarwin
>> -DNO_GL_PREFIX -I/usr/X11R6/include -Iext -I/usr/local/include -g -O2
>> -fPIC -g -O2 -c Shape.cpp -o Shape.o
>> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
>> -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG
>> -I/System/Library/Frameworks/OpenGL.framework/Headers -DHAVE_PNG_H -DDarwin
>> -DNO_GL_PREFIX -I/usr/X11R6/include -Iext -I/usr/local/include -g -O2
>> -fPIC -g -O2 -c SphereMesh.cpp -o SphereMesh.o
>> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
>> -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG
>> -I/System/Library/Frameworks/OpenGL.framework/Headers -DHAVE_PNG_H -DDarwin
>> -DNO_GL_PREFIX -I/usr/X11R6/include -Iext -I/usr/local/include -g -O2
>> -fPIC -g -O2 -c SphereSet.cpp -o SphereSet.o
>> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
>> -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG
>> -I/System/Library/Frameworks/OpenGL.framework/Headers -DHAVE_PNG_H -DDarwin
>> -DNO_GL_PREFIX -I/usr/X11R6/include -Iext -I/usr/local/include -g -O2
>> -fPIC -g -O2 -c SpriteSet.cpp -o SpriteSet.o
>> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
>> -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG
>> -I/System/Library/Frameworks/OpenGL.framework/Headers -DHAVE_PNG_H -DDarwin
>> -DNO_GL_PREFIX -I/usr/X11R6/include -Iext -I/usr/local/include -g -O2
>> -fPIC -g -O2 -c String.cpp -o String.o
>> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
>> -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG
>> -I/System/Library/Frameworks/OpenGL.framework/Headers -DHAVE_PNG_H -DDarwin
>> -DNO_GL_PREFIX -I/usr/X11R6/include -Iext -I/usr/local/include -g -O2
>> -fPIC -g -O2 -c Surface.cpp -o Surface.o
>> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
>> -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG
>> -I/System/Library/Frameworks/OpenGL.framework/Headers -DHAVE_PNG_H -DDarwin
>> -DNO_GL_PREFIX -I/usr/X11R6/include -Iext -I/usr/local/include -g -O2
>> -fPIC -g -O2 -c TextSet.cpp -o TextSet.o
>> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
>> -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG
>> -I/System/Library/Frameworks/OpenGL.framework/Headers -DHAVE_PNG_H -DDarwin
>> -DNO_GL_PREFIX -I/usr/X11R6/include -Iext -I/usr/local/include -g -O2
>> -fPIC -g -O2 -c Texture.cpp -o Texture.o
>> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
>> -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG
>> -I/System/Library/Frameworks/OpenGL.framework/Headers -DHAVE_PNG_H -DDarwin
>> -DNO_GL_PREFIX -I/usr/X11R6/include -Iext -I/usr/local/include -g -O2
>> -fPIC -g -O2 -c Viewpoint.cpp -o Viewpoint.o
>> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
>> -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG
>> -I/System/Library/Frameworks/OpenGL.framework/Headers -DHAVE_PNG_H -DDarwin
>> -DNO_GL_PREFIX -I/usr/X11R6/include -Iext -I/usr/local/include -g -O2
>> -fPIC -g -O2 -c api.cpp -o api.o
>> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
>> -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG
>> -I/System/Library/Frameworks/OpenGL.framework/Headers -DHAVE_PNG_H -DDarwin
>> -DNO_GL_PREFIX -I/usr/X11R6/include -Iext -I/usr/local/include -g -O2
>> -fPIC -g -O2 -c assert.cpp -o assert.o
>> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
>> -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG
>> -I/System/Library/Frameworks/OpenGL.framework/Headers -DHAVE_PNG_H -DDarwin
>> -DNO_GL_PREFIX -I/usr/X11R6/include -Iext -I/usr/local/include -g -O2
>> -fPIC -g -O2 -c callbacks.cpp -o callbacks.o
>> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
>> -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG
>> -I/System/Library/Frameworks/OpenGL.framework/Headers -DHAVE_PNG_H -DDarwin
>> -DNO_GL_PREFIX -I/usr/X11R6/include -Iext -I/usr/local/include -g -O2
>> -fPIC -g -O2 -c device.cpp -o device.o
>> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
>> -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG
>> -I/System/Library/Frameworks/OpenGL.framework/Headers -DHAVE_PNG_H -DDarwin
>> -DNO_GL_PREFIX -I/usr/X11R6/include -Iext -I/usr/local/include -g -O2
>> -fPIC -g -O2 -c devicemanager.cpp -o devicemanager.o
>> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
>> -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG
>> -I/System/Library/Frameworks/OpenGL.framework/Headers -DHAVE_PNG_H -DDarwin
>> -DNO_GL_PREFIX -I/usr/X11R6/include -Iext -I/usr/local/include -g -O2
>> -fPIC -g -O2 -c fps.cpp -o fps.o
>> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
>> -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG
>> -I/System/Library/Frameworks/OpenGL.framework/Headers -DHAVE_PNG_H -DDarwin
>> -DNO_GL_PREFIX -I/usr/X11R6/include -Iext -I/usr/local/include -g -O2
>> -fPIC -g -O2 -c ftgl.cpp -o ftgl.o
>> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
>> -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG
>> -I/System/Library/Frameworks/OpenGL.framework/Headers -DHAVE_PNG_H -DDarwin
>> -DNO_GL_PREFIX -I/usr/X11R6/include -Iext -I/usr/local/include -g -O2
>> -fPIC -g -O2 -c geom.cpp -o geom.o
>> gcc -arch x86_64 -std=gnu99
>> -I/Library/Frameworks/R.framework/Resources/include
>> -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG
>> -I/System/Library/Frameworks/OpenGL.framework/Headers -DHAVE_PNG_H -DDarwin
>> -DNO_GL_PREFIX -I/usr/X11R6/include -Iext -I/usr/local/include -fPIC -g
>> -O2 -c gl2ps.c -o gl2ps.o
>> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
>> -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG
>> -I/System/Library/Frameworks/OpenGL.framework/Headers -DHAVE_PNG_H -DDarwin
>> -DNO_GL_PREFIX -I/usr/X11R6/include -Iext -I/usr/local/include -g -O2
>> -fPIC -g -O2 -c glErrors.cpp -o glErrors.o
>> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
>> -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG
>> -I/System/Library/Frameworks/OpenGL.framework/Headers -DHAVE_PNG_H -DDarwin
>> -DNO_GL_PREFIX -I/usr/X11R6/include -Iext -I/usr/local/include -g -O2
>> -fPIC -g -O2 -c glgui.cpp -o glgui.o
>> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
>> -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG
>> -I/System/Library/Frameworks/OpenGL.framework/Headers -DHAVE_PNG_H -DDarwin
>> -DNO_GL_PREFIX -I/usr/X11R6/include -Iext -I/usr/local/include -g -O2
>> -fPIC -g -O2 -c gui.cpp -o gui.o
>> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
>> -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG
>> -I/System/Library/Frameworks/OpenGL.framework/Headers -DHAVE_PNG_H -DDarwin
>> -DNO_GL_PREFIX -I/usr/X11R6/include -Iext -I/usr/local/include -g -O2
>> -fPIC -g -O2 -c init.cpp -o init.o
>> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
>> -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG
>> -I/System/Library/Frameworks/OpenGL.framework/Headers -DHAVE_PNG_H -DDarwin
>> -DNO_GL_PREFIX -I/usr/X11R6/include -Iext -I/usr/local/include -g -O2
>> -fPIC -g -O2 -c par3d.cpp -o par3d.o
>> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
>> -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG
>> -I/System/Library/Frameworks/OpenGL.framework/Headers -DHAVE_PNG_H -DDarwin
>> -DNO_GL_PREFIX -I/usr/X11R6/include -Iext -I/usr/local/include -g -O2
>> -fPIC -g -O2 -c pixmap.cpp -o pixmap.o
>> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
>> -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG
>> -I/System/Library/Frameworks/OpenGL.framework/Headers -DHAVE_PNG_H -DDarwin
>> -DNO_GL_PREFIX -I/usr/X11R6/include -Iext -I/usr/local/include -g -O2
>> -fPIC -g -O2 -c render.cpp -o render.o
>> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
>> -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG
>> -I/System/Library/Frameworks/OpenGL.framework/Headers -DHAVE_PNG_H -DDarwin
>> -DNO_GL_PREFIX -I/usr/X11R6/include -Iext -I/usr/local/include -g -O2
>> -fPIC -g -O2 -c rglmath.cpp -o rglmath.o
>> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
>> -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG
>> -I/System/Library/Frameworks/OpenGL.framework/Headers -DHAVE_PNG_H -DDarwin
>> -DNO_GL_PREFIX -I/usr/X11R6/include -Iext -I/usr/local/include -g -O2
>> -fPIC -g -O2 -c rglview.cpp -o rglview.o
>> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
>> -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG
>> -I/System/Library/Frameworks/OpenGL.framework/Headers -DHAVE_PNG_H -DDarwin
>> -DNO_GL_PREFIX -I/usr/X11R6/include -Iext -I/usr/local/include -g -O2
>> -fPIC -g -O2 -c scene.cpp -o scene.o
>> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
>> -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG
>> -I/System/Library/Frameworks/OpenGL.framework/Headers -DHAVE_PNG_H -DDarwin
>> -DNO_GL_PREFIX -I/usr/X11R6/include -Iext -I/usr/local/include -g -O2
>> -fPIC -g -O2 -c select.cpp -o select.o
>> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
>> -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG
>> -I/System/Library/Frameworks/OpenGL.framework/Headers -DHAVE_PNG_H -DDarwin
>> -DNO_GL_PREFIX -I/usr/X11R6/include -Iext -I/usr/local/include -g -O2
>> -fPIC -g -O2 -c win32gui.cpp -o win32gui.o
>> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
>> -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG
>> -I/System/Library/Frameworks/OpenGL.framework/Headers -DHAVE_PNG_H -DDarwin
>> -DNO_GL_PREFIX -I/usr/X11R6/include -Iext -I/usr/local/include -g -O2
>> -fPIC -g -O2 -c win32lib.cpp -o win32lib.o
>> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
>> -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG
>> -I/System/Library/Frameworks/OpenGL.framework/Headers -DHAVE_PNG_H -DDarwin
>> -DNO_GL_PREFIX -I/usr/X11R6/include -Iext -I/usr/local/include -g -O2
>> -fPIC -g -O2 -c x11gui.cpp -o x11gui.o
>> x11gui.cpp: In constructor gui::X11GUIFactory::X11GUIFactory(const char*):
>> x11gui.cpp:468: warning: deprecated conversion from string constant to
>> char*
>> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
>> -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG
>> -I/System/Library/Frameworks/OpenGL.framework/Headers -DHAVE_PNG_H -DDarwin
>> -DNO_GL_PREFIX -I/usr/X11R6/include -Iext -I/usr/local/include -g -O2
>> -fPIC -g -O2 -c x11lib.cpp -o x11lib.o
>> g++ -arch x86_64 -dynamiclib -Wl,-headerpad_max_install_names -undefined
>> dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o
>> rgl.so ABCLineSet.o BBoxDeco.o Background.o Color.o Disposable.o Light.o
>> LineSet.o LineStripSet.o Material.o PlaneSet.o PointSet.o PrimitiveSet.o
>> QuadSet.o RenderContext.o Shape.o SphereMesh.o SphereSet.o SpriteSet.o
>> String.o Surface.o TextSet.o Texture.o Viewpoint.o api.o assert.o
>> callbacks.o device.o devicemanager.o fps.o ftgl.o geom.o gl2ps.o glErrors.o
>> glgui.o gui.o init.o par3d.o pixmap.o render.o rglmath.o rglview.o scene.o
>> select.o win32gui.o win32lib.o x11gui.o x11lib.o -lGLU -lGL -framework
>> OpenGL -dylib_file
>> /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib:/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib
>> -lpng -L/usr/X11/lib -lX11 -F/Library/Frameworks/R.framework/.. -framework
>> R -Wl,-framework -Wl,CoreFoundation
>> mkdir Temp
>> mv x11*.o Temp
>> mkdir -p AGL
>> mv AGL/* .
>> MAKINGAGL=TRUE /Library/Frameworks/R.framework/Resources/bin/R CMD SHLIB -o
>> aglrgl.so *.cpp *.c \
>> osx/*.mm osx/*.cpp
>> mv: rename AGL/* to ./*: No such file or directory
>> make: [aglrgl.so] Error 1 (ignored)
>> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
>> -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG
>> -DHAVE_PNG_H -DRGL_USE_COCOA -Iext -I/usr/local/include -g -O2 -fPIC -g
>> -O2 -c x11gui.cpp -o x11gui.o
>> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
>> -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG
>> -DHAVE_PNG_H -DRGL_USE_COCOA -Iext -I/usr/local/include -g -O2 -fPIC -g
>> -O2 -c x11lib.cpp -o x11lib.o
>> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
>> -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG
>> -DHAVE_PNG_H -DRGL_USE_COCOA -Iext -I/usr/local/include -fPIC -c
>> osx/osxgui.mm -o osx/osxgui.o
>> osx/osxgui.mm:9:2: error: #error Cocoa backend reguires FreeType font reneder
>> make[1]: *** [osx/osxgui.o] Error 1
>> make: *** [aglrgl.so] Error 1
>> ERROR: compilation failed for package rgl
>> * removing
>> /Library/Frameworks/R.framework/Versions/2.15/Resources/library/rgl
>> * restoring previous
>> /Library/Frameworks/R.framework/Versions/2.15/Resources/library/rgl
>>
>> The downloaded source packages are in
>>
>> /private/var/folders/20/20puJrE0FrWErlnMP5nP6E+++TI/-Tmp-/RtmplpCNL5/downloaded_packages
>> Warning message:
>> In install.packages("rgl", type = "source") :
>> installation of package rgl had non-zero exit status
>> =======================
>>
>>
>>
>>> sessionInfo()
>> R version 2.15.1 (2012-06-22)
>> Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit)
>>
>> locale:
>> [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
>>
>> attached base packages:
>> [1] splines stats graphics grDevices datasets utils methods
>> base
>>
>> other attached packages:
>> [1] plotrix_3.4-2 RColorBrewer_1.0-5 mclust_3.4.11
>> multicore_0.1-7 LVSmiRNA_1.6.0
>> [6] vsn_3.24.0 affy_1.34.0 MASS_7.3-19
>> quantreg_4.81 SparseM_0.96
>> [11] Biobase_2.16.0 BiocGenerics_0.2.0 pvclust_1.2-2
>> arrayQualityMetrics_3.12.0 impute_1.30.0
>> [16] marray_1.34.0 limma_3.12.1 fortunes_1.5-0
>> snowfall_1.84 snow_0.3-9
>>
>> loaded via a namespace (and not attached):
>> [1] affyio_1.24.0 affyPLM_1.32.0 annotate_1.34.1
>> AnnotationDbi_1.18.1 beadarray_2.6.0 BeadDataPackR_1.8.0
>> [7] BiocInstaller_1.4.7 Biostrings_2.24.1 Cairo_1.5-1
>> cluster_1.14.2 colorspace_1.1-1 DBI_0.2-5
>> [13] genefilter_1.38.0 grid_2.15.1 Hmisc_3.9-3
>> hwriter_1.3 IRanges_1.14.4 KernSmooth_2.23-8
>> [19] lattice_0.20-6 latticeExtra_0.6-19 plyr_1.7.1
>> preprocessCore_1.18.0 reshape2_1.2.1 RSQLite_0.11.1
>> [25] setRNG_2011.11-2 stats4_2.15.1 stringr_0.6
>> survival_2.36-14 SVGAnnotation_0.93-1 tools_2.15.1
>> [31] XML_3.9-4 xtable_1.7-0 zlibbioc_1.2.0
>>
>>
>> [[alternative HTML version deleted]]
>>
>> ______________________________________________
>> R-help@r-project.org mailing list
>> https://stat.ethz.ch/mailman/listinfo/r-help
>> PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
>> and provide commented, minimal, self-contained, reproducible code.
>
> David Winsemius, MD
> West Hartford, CT
>
--
Guillaume Meurice - PhD
Plateforme de Bioinformatique
[[alternative HTML version deleted]]
______________________________________________
R-help@r-project.org mailing list
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PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
