I still haven't found a working solution. Is it allowed to attach a file so
that somebodyelse can reproduce the problem?
On Thu, May 3, 2012 at 5:00 PM, William Dunlap <wdun...@tibco.com> wrote:
> You can do the following to allow others to recreate your problem.
>
> yourFileBytes <- readBin("yourFile", what="integer", size=1, n=300) # is
> 300 bytes enough to see the problem?
> dput(yourFileBytes)
>
> Put the output of dput(yourFileBytes) in your mail. Someone can (and you
> should)
> recreate the problem with
> bytes <- ... copy 'n paste the printout of dput(bytes) here ...
> tf <- tempfile()
> stopifnot(is.integer(bytes) && all(abs(bytes)<=128)) # to make sure bytes
> was copied correctly
> writeBin(bytes, con=tf, size=1)
>
> Then show just the commands needed to read a couple of rows of your file,
> along with
> the expected output, as precisely and you can. E.g.,
> con <- file(tf, "rb")
> readBin(con, what="integer", size=4, n=2) # expect 3 then something less
> than 10
> readBin(con, what="numeric", size=8, n=3) # expect 2 numbers in range (0,
> 32] then 2.57
> ...
>
> Bill Dunlap
> Spotfire, TIBCO Software
> wdunlap tibco.com
>
>
> > -----Original Message-----
> > From: r-help-boun...@r-project.org [mailto:r-help-boun...@r-project.org]
> On Behalf
> > Of kapo coulibaly
> > Sent: Thursday, May 03, 2012 10:57 AM
> > To: r-help@r-project.org
> > Subject: Re: [R] Help with readBin
> >
> > I believe here is the structure of the file I'm trying to read:
> > record marker (4 bytes), 2 integers (4 bytes each), 2 doubles (8 bytes
> > each), one string (16 bytes or 16 characters), 3 integers (4 bytes
> each), 1
> > record marker (4 bytes) and a big array of doubles (8 bytes each).
> > Everything in the file is read correctly except for the doubles.
> > If any indication, I've read similar file before with readBin the only
> > difference is this one was created with a code compiled with gfortran in
> > linux 64 bit. I was able to read the same output binary file when the
> > fortran source code was compiled in windows xp 32 bit. The values I'm
> > expecting should be between 0 and about 32.
> >
> >
> >
> >
> > The code I used is:
> >
> >
> >
> > # Loading Required libraries
> > library(tcltk)
> >
> > # Tk inputbox function
> > inputBox<-function() {
> > tt<-tktoplevel()
> > Zmin<-tclVar("0")
> > Zmax<-tclVar("0")
> > dZ<-tclVar("0")
> > entry.Zmin<-tkentry(tt,width="20",textvariable=Zmin)
> > entry.Zmax<-tkentry(tt,width="20",textvariable=Zmax)
> > entry.dZ<-tkentry(tt,width="20",textvariable=dZ)
> > lbl.Zmin<-tklabel(tt,text="Number of layers")
> > lbl.Zmax<-tklabel(tt,text="Number of Stress Periods")
> > lbl.dZ<-tklabel(tt,text="dZ")
> > tkgrid(lbl.Zmin,entry.Zmin)
> > tkgrid(entry.Zmin)
> > tkgrid(lbl.Zmax,entry.Zmax)
> > tkgrid(entry.Zmax)
> > #tkgrid(lbl.dZ,entry.dZ)
> > #tkgrid(entry.dZ)
> >
> > OnOK <- function()
> > {
> > # NameVal <- c(tclvalue(Zmin),tclvalue(Zmax),tclvalue(dZ))
> > tkdestroy(tt)
> > }
> > OK.but <-tkbutton(tt,text=" OK ",command=OnOK)
> > # tkbind(entry.Name, "<Return>",OnOK)
> > tkgrid(OK.but,columnspan=3)
> > tkfocus(tt)
> > tkwait.window(tt)
> > res<-as.numeric(c(tclvalue(Zmin),tclvalue(Zmax)))#,tclvalue(dZ)))
> > return(res)
> > }
> >
> > ########################################################################
> > ########
> > # Main program
> > ########################################################################
> > ########
> >
> > # Model Parameters input (number of layers and stress periods)
> > param<-inputBox()
> >
> > # Select and open Modflow Binary file for reading
> > fich<-tclvalue(tkgetOpenFile(title="Modflow Binary File",filetypes="{{hds
> > binary Files} {.hds}} {{All files} *}"))
> > zz <- file(fich, "rb")
> >
> > # Cycling thru time steps and layers
> > for (k in 1:param[2]) {
> > for (i in 1:param[1]) {
> > readBin(zz,what="numeric",n=1,size=4) # record marker typical of
> > fortran access="sequential" in gfortran
> > readBin(zz,what="integer",n=2,size=4)->N1
> > readBin(zz,what="double",n=2,size=8)->N2
> > readChar(zz,16)->txt1
> > print(txt1)
> > readBin(zz,what="integer",n=3,size=4)->N3
> > tnber<-N3[1]*N3[2]
> > readBin(zz,what="integer",n=1,size=4) # record marker typical of
> > fortran access="sequential" in gfortran
> > readBin(zz,what=real(),n=tnber,size=4)->N4
> > readBin(zz,what="integer",n=2,size=4) # record marker typical of
> > fortran access="sequential" in gfortran
> > print(N4[1:10])
> >
> >
> > }
> >
> > }
> >
> > close(zz)
> >
> > On Thu, May 3, 2012 at 1:26 PM, Duncan Murdoch
> > <murdoch.dun...@gmail.com>wrote:
> >
> > > On 03/05/2012 12:41 PM, kapo coulibaly wrote:
> > >
> > >> I'm trying to read a binary file created by a fortran code using
> readBin
> > >> and readChar. Everything reads fine (integers and strings) except for
> > >> double precision numbers, they are read as huge or very small number
> > >> (1E-250,...). I tried various endianness, swap, But nothing has
> worked so
> > >> far.
> > >> I also tried on R 64 bit for linux and windows (R 2.14) and R 2.11 on
> > >> windows XP 32 bit.
> > >> Any help would be appreciated.
> > >>
> > >
> > > As I wrote to someone else with a similar problem a couple of weeks
> ago:
> > >
> > > You need to see what's in the file. The hexView package can dump it in
> > > various formats; see example(viewFormat) for a couple.
> > >
> > > Duncan Murdoch
> > >
> >
> > [[alternative HTML version deleted]]
> >
> > ______________________________________________
> > R-help@r-project.org mailing list
> > https://stat.ethz.ch/mailman/listinfo/r-help
> > PLEASE do read the posting guide
> http://www.R-project.org/posting-guide.html
> > and provide commented, minimal, self-contained, reproducible code.
>
[[alternative HTML version deleted]]
______________________________________________
R-help@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
