Hi Michael, I wasn't getting how to actually use it from ?suppressPackageStartupMessages example online.
Thank you very much. Dan -----Original Message----- From: R. Michael Weylandt [mailto:michael.weyla...@gmail.com] Sent: Monday, June 18, 2012 2:53 PM To: Lopez, Dan Cc: R help (r-help@r-project.org) Subject: Re: [R] Error w/ Start up Script You are perhaps not using suppressPackageStartupMessages() correctly if you're getting those warnings: my .Rprofile has these lines: suppressPackageStartupMessages(library("quantmod")) suppressPackageStartupMessages(library("ggplot2")) suppressPackageStartupMessages(library("lattice")) but produces no warnings (the first does when loading in a clean session without suppressing) Best, Michael On Mon, Jun 18, 2012 at 4:08 PM, Lopez, Dan <lopez...@llnl.gov> wrote: > Ouch Bert. Not patience for the newbies, I see. > > I know what ?anything means which is why I didn't ask about ?Startup. But > being that I just recently discovered what Rprofile.site is I thought it > might do something different within the start-up file and tried it both ways. > > Besides I think what I really need is to just figure out as I said: > I did however go to the Misc menu and select "List search path" and got the > below results. Not exactly sure what it means but I do notice that several of > the packages that popup at startup as being "masked" appear in this list. > Maybe this is the problem? If so how do you take out what you don't need at > startup? > > > search() > > [1] ".GlobalEnv" "package:stats" "package:graphics" > "package:grDevices" "package:datasets" > > [6] "package:rattle" "package:R.utils" "package:utils" > "package:R.oo" "package:R.methodsS3" > > [11] "package:methods" "Autoloads" "package:base" > > > > Dan > > From: Bert Gunter [mailto:gunter.ber...@gene.com] > Sent: Monday, June 18, 2012 1:50 PM > To: Lopez, Dan > Cc: David Winsemius; R help (r-help@r-project.org) > Subject: Re: [R] Error w/ Start up Script > > I gave you the references you need. It's up to you to read and > understand how to use them. You apparently need to work harder to do > so. BTW > > ?anything > > is an alternative way to type > > help("anything") > > at the command line for R's help pages. > > -- Bert > On Mon, Jun 18, 2012 at 1:34 PM, Lopez, Dan > <lopez...@llnl.gov<mailto:lopez...@llnl.gov>> wrote: > Hi Bert, > > I tried entering: "?suppressPackageStartupMessages" and then > "suppressPackageStartupMessages" into my Rprofile.site file and the messages > still came up. > > I did however go to the Misc menu and select "List search path" and got the > below results. Not exactly sure what it means but I do notice that several of > the packages that popup at startup as being "masked" appear in this list. > Maybe this is the problem? If so how do you take out what you don't need at > startup? > >> search() > [1] ".GlobalEnv" "package:stats" "package:graphics" > "package:grDevices" "package:datasets" > [6] "package:rattle" "package:R.utils" "package:utils" > "package:R.oo" "package:R.methodsS3" > [11] "package:methods" "Autoloads" "package:base" >> 0 > > Thanks. > Dan > > From: Bert Gunter > [mailto:gunter.ber...@gene.com<mailto:gunter.ber...@gene.com>] > Sent: Monday, June 18, 2012 1:10 PM > To: Lopez, Dan > Cc: David Winsemius; R help > (r-help@r-project.org<mailto:r-help@r-project.org>) > Subject: Re: [R] Error w/ Start up Script > > ?suppressPackageStartupMessages > > Put this into your appropriate startup file. > ?Startup ## for details on starting R and what files are executed at startup. > > -- Bert > On Mon, Jun 18, 2012 at 12:46 PM, Lopez, Dan > <lopez...@llnl.gov<mailto:lopez...@llnl.gov>> wrote: > David, > > Sorry I should have been more specific. They are not as much errors as they > are extra script that is running at startup after "Type q() to quit R". It > wasn't there before. And am thinking eventually it could become a problem. > > Thanks. > Dan > > Here it is again...what it looks like when I first startup R (partial copy > and paste): > > .... > ... > .. > R is a collaborative project with many contributors. > Type 'contributors()' for more information and 'citation()' on how to > cite R or R packages in publications. > > Type 'demo()' for some demos, 'help()' for on-line help, or > 'help.start()' for an HTML browser interface to help. > Type 'q()' to quit R. > > Attempting to load the environment 'package:R.utils' > R.methodsS3 v1.2.2 (2010-11-17) successfully loaded. See ?R.methodsS3 for > help. > R.oo v1.9.3 (2012-03-18) successfully loaded. See ?R.oo for help. > > Attaching package: 'R.oo' > > The following object(s) are masked from 'package:R.methodsS3': > > throw.default > .. > ... > .... > -----Original Message----- > From: David Winsemius > [mailto:dwinsem...@comcast.net<mailto:dwinsem...@comcast.net>] > Sent: Monday, June 18, 2012 12:12 PM > To: Lopez, Dan > Cc: R help (r-help@r-project.org<mailto:r-help@r-project.org>) > Subject: Re: [R] Error w/ Start up Script > > > On Jun 18, 2012, at 11:25 AM, Lopez, Dan wrote: > >> I noticed about a couple weeks ago that my R start up script starting >> showing the below errors, following the line "Type 'q()' to quit R" >> > > I didn't see any errors reported. I didn't see any warnings, either. > > -- > David. > >> Not sure what I did different and so far it hasn't caused major >> problems but kind of fear that it will. >> >> Can you please help? >> I also posted my Rprofile below. >> >> Attempting to load the environment 'package:R.utils' >> R.methodsS3 v1.2.2 (2010-11-17) successfully loaded. See ? >> R.methodsS3 for help. >> R.oo v1.9.3 (2012-03-18) successfully loaded. See ?R.oo for help. >> >> Attaching package: 'R.oo' >> >> The following object(s) are masked from 'package:R.methodsS3': >> >> throw.default >> >> The following object(s) are masked from 'package:methods': >> >> getClass, getClasses, getMethods >> >> The following object(s) are masked from 'package:base': >> >> attach, detach, gc, load, save >> >> R.utils v1.12.1 (2012-03-20) successfully loaded. See ?R.utils for >> help. >> >> Attaching package: 'R.utils' >> >> The following object(s) are masked from 'package:utils': >> >> timestamp >> >> The following object(s) are masked from 'package:base': >> >> cat, commandArgs, getOption, inherits, isOpen, lapply, parse, >> warnings >> >> And here is my Rprofile.site file specs: >> # Things you might want to change >> # options(papersize="a4") >> # options(editor="notepad") >> # options(pager="internal") >> >> # set the default help type >> # options(help_type="text") >> options(help_type="html") >> >> # set a site library >> # .Library.site <- file.path(chartr("\\", "/", R.home()), "site- >> library") >> >> # set a CRAN mirror >> local({r <- getOption("repos") >> r["CRAN"] <- "http://cran.cnr.Berkeley.edu"; >> options(repos=r)}) >> >> # Give a fortune cookie, but only to interactive sessions # (This >> would need the fortunes package to be installed.) # if >> (interactive()) >> # fortunes::fortune() >> >> >> Daniel Lopez >> Workforce Analytics & Metrics Team >> >> >> >> >> [[alternative HTML version deleted]] >> >> ______________________________________________ >> R-help@r-project.org<mailto:R-help@r-project.org> mailing list >> https://stat.ethz.ch/mailman/listinfo/r-help >> PLEASE do read the posting guide >> http://www.R-project.org/posting-guide.html >> and provide commented, minimal, self-contained, reproducible code. > > David Winsemius, MD > West Hartford, CT > > ______________________________________________ > R-help@r-project.org<mailto:R-help@r-project.org> mailing list > https://stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting guide > http://www.R-project.org/posting-guide.html > and provide commented, minimal, self-contained, reproducible code. > > > > -- > > Bert Gunter > Genentech Nonclinical Biostatistics > > Internal Contact Info: > Phone: 467-7374 > Website: > http://pharmadevelopment.roche.com/index/pdb/pdb-functional-groups/pdb > -biostatistics/pdb-ncb-home.htm > > > > > > -- > > Bert Gunter > Genentech Nonclinical Biostatistics > > Internal Contact Info: > Phone: 467-7374 > Website: > http://pharmadevelopment.roche.com/index/pdb/pdb-functional-groups/pdb > -biostatistics/pdb-ncb-home.htm > > > > [[alternative HTML version deleted]] > > ______________________________________________ > R-help@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting guide > http://www.R-project.org/posting-guide.html > and provide commented, minimal, self-contained, reproducible code. ______________________________________________ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
