Hi Srod --
On 05/16/2012 11:04 PM, srod wrote:
Hi,
I'm using a command in bioconductor that seems to require a package called
hu6800cdf. I've installed this properly but I still get the same error:
Could not find array definition file ' hu6800cdf.qcdef '. Simpleaffy does
not know the QC parameters for this array type.
See the package vignette for details about how to specify QC parameters
manually.
Please ask questions about Bioconductor packages on the Bioconductor
mailing list,
http://bioconductor.org/help/mailing-list/
cc'ing the maintainer
> packageDescription("simpleaffy")$Maintainer
including the output of
> sessionInfo()
and the precise command that generates the error.
The package vignette
> vignette(package="simpleaffy", "simpleAffy")
especially section 5.4, Specifying alternate QC configurations, may be
helpful.
Martin
I've tried specifying the cdfname file by using
data<-ReadAffy(cdfname="hu6800cdf") but it still returns the same error.
The version of R that I'm using is 2.15 and the bioconductor version is
2.10.
Does anyone know how to solve this?
Thanks,
srod
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