On 24.04.2012 20:13, Ben Rhelp wrote:
Hi Uwe,
I tried removing D:\BenSave\Rtools\MinGW64\bin (and replacing it with
D:\BenSave\Rtools\MinGW\bin) but the result is the same.
If I try to run "install.packages('RMySQL', type = 'source')" on my R 32bits
instance I get the following which seems to be due to having a MySQL server 64bits as
expected.
>
any other suggestions?
Yes, do not replace but delete that part, you have gcc-4.6.3 in your
path which should be sufficient.
I do not know if it is possible to compile RMySQL afterwards (untested,
and it depends on the MySQL you are linking against.
best,
Uwe Ligges
thanks in advance,
Ben
install.packages('RMySQL', type = 'source')
--- Please select a CRAN mirror for use in this session ---
trying URL 'http://cran.ma.imperial.ac.uk/src/contrib/RMySQL_0.9-3.tar.gz'
Content type 'application/x-gzip' length 165363 bytes (161 Kb)
opened URL
downloaded 161 Kb
* installing *source* package 'RMySQL' ...
** package 'RMySQL' successfully unpacked and MD5 sums checked
checking for $MYSQL_HOME... D:/MySQL/forR55
** libs
Warning: this package has a non-empty 'configure.win' file,
so building only the main architecture
gcc -I"D:/BenSave/R/R-215~1.0/include" -DNDEBUG -I"D:/MySQL/forR55"/include
-O3 -Wall -std=gnu99 -mtune=core2 -c RS-DBI.c -o RS-DBI.o
gcc -I"D:/BenSave/R/R-215~1.0/include" -DNDEBUG -I"D:/MySQL/forR55"/include
-O3 -Wall -std=gnu99 -mtune=core2 -c RS-MySQL.c -o RS-MySQL.o
gcc -shared -s -static-libgcc -o RMySQL.dll tmp.def RS-DBI.o RS-MySQL.o
D:/MySQL/forR55/lib/opt/libmysql.lib -LD:/BenSave/R/R-215~1.0/bin/i386 -lR
RS-MySQL.o:RS-MySQL.c:(.text+0xba): undefined reference to
`mysql_more_results@4'
RS-MySQL.o:RS-MySQL.c:(.text+0x352): undefined reference to `mysql_init@4'
RS-MySQL.o:RS-MySQL.c:(.text+0x36f): undefined reference to `mysql_options@12'
RS-MySQL.o:RS-MySQL.c:(.text+0x38d): undefined reference to `mysql_options@12'
RS-MySQL.o:RS-MySQL.c:(.text+0x3ab): undefined reference to `mysql_options@12'
RS-MySQL.o:RS-MySQL.c:(.text+0x3e6): undefined reference to
`mysql_real_connect@32'
RS-MySQL.o:RS-MySQL.c:(.text+0x44a): undefined reference to `mysql_close@4'
RS-MySQL.o:RS-MySQL.c:(.text+0x5b8): undefined reference to `mysql_error@4'
RS-MySQL.o:RS-MySQL.c:(.text+0x9c4): undefined reference to `mysql_close@4'
RS-MySQL.o:RS-MySQL.c:(.text+0xa3d): undefined reference to
`mysql_fetch_fields@4'
RS-MySQL.o:RS-MySQL.c:(.text+0xa55): undefined reference to
`mysql_field_count@4'
RS-MySQL.o:RS-MySQL.c:(.text+0xd5b): undefined reference to
`mysql_next_result@4'
RS-MySQL.o:RS-MySQL.c:(.text+0xd85): undefined reference to `mysql_use_result@4'
RS-MySQL.o:RS-MySQL.c:(.text+0xd93): undefined reference to
`mysql_field_count@4'
RS-MySQL.o:RS-MySQL.c:(.text+0xe7b): undefined reference to
`mysql_affected_rows@4'
RS-MySQL.o:RS-MySQL.c:(.text+0xf56): undefined reference to `mysql_fetch_row@4'
RS-MySQL.o:RS-MySQL.c:(.text+0xf73): undefined reference to
`mysql_free_result@4'
RS-MySQL.o:RS-MySQL.c:(.text+0xfd7): undefined reference to `mysql_query@8'
RS-MySQL.o:RS-MySQL.c:(.text+0xfea): undefined reference to `mysql_use_result@4'
RS-MySQL.o:RS-MySQL.c:(.text+0xffb): undefined reference to
`mysql_field_count@4'
RS-MySQL.o:RS-MySQL.c:(.text+0x109d): undefined reference to `mysql_error@4'
RS-MySQL.o:RS-MySQL.c:(.text+0x1146): undefined reference to
`mysql_affected_rows@4'
RS-MySQL.o:RS-MySQL.c:(.text+0x12bd): undefined reference to `mysql_fetch_row@4'
RS-MySQL.o:RS-MySQL.c:(.text+0x12d8): undefined reference to
`mysql_fetch_lengths@4'
RS-MySQL.o:RS-MySQL.c:(.text+0x154f): undefined reference to `mysql_errno@4'
RS-MySQL.o:RS-MySQL.c:(.text+0x16e4): undefined reference to `mysql_errno@4'
RS-MySQL.o:RS-MySQL.c:(.text+0x16f2): undefined reference to `mysql_error@4'
RS-MySQL.o:RS-MySQL.c:(.text+0x1766): undefined reference to `mysql_fetch_row@4'
RS-MySQL.o:RS-MySQL.c:(.text+0x1775): undefined reference to
`mysql_free_result@4'
RS-MySQL.o:RS-MySQL.c:(.text+0x1990): undefined reference to
`mysql_get_client_info@0'
RS-MySQL.o:RS-MySQL.c:(.text+0x1b84): undefined reference to
`mysql_get_host_info@4'
RS-MySQL.o:RS-MySQL.c:(.text+0x1bae): undefined reference to
`mysql_get_server_info@4'
RS-MySQL.o:RS-MySQL.c:(.text+0x1bde): undefined reference to
`mysql_get_proto_info@4'
RS-MySQL.o:RS-MySQL.c:(.text+0x1bf5): undefined reference to `mysql_thread_id@4'
RS-MySQL.o:RS-MySQL.c:(.text+0x294a): undefined reference to `mysql_fetch_row@4'
RS-MySQL.o:RS-MySQL.c:(.text+0x2977): undefined reference to `mysql_errno@4'
RS-MySQL.o:RS-MySQL.c:(.text+0x2aca): undefined reference to
`mysql_fetch_lengths@4'
RS-MySQL.o:RS-MySQL.c:(.text+0x315c): undefined reference to `mysql_insert_id@4'
RS-MySQL.o:RS-MySQL.c:(.text+0x324d): undefined reference to
`mysql_real_escape_string@16'
RS-MySQL.o:RS-MySQL.c:(.text+0x3317): undefined reference to
`mysql_get_client_info@0'
RS-MySQL.o:RS-MySQL.c:(.text+0x335d): undefined reference to
`mysql_get_client_version@0'
RS-MySQL.o:RS-MySQL.c:(.text+0x33ae): undefined reference to
`mysql_server_init@12'
RS-MySQL.o:RS-MySQL.c:(.text+0x33b6): undefined reference to
`mysql_get_client_version@0'
RS-MySQL.o:RS-MySQL.c:(.text+0x33d7): undefined reference to
`mysql_get_client_info@0'
RS-MySQL.o:RS-MySQL.c:(.text+0x3408): undefined reference to
`mysql_server_end@0'
collect2: ld returned 1 exit status
ERROR: compilation failed for package 'RMySQL'
* removing 'D:/BenSave/R/R-2.15.0/library/RMySQL'
The downloaded source packages are in
‘C:\Users\BenSave\TempFolder\RtmpS8df20\downloaded_packages’
Warning messages:
1: running command 'D:/BenSave/R/R-2.15.0/bin/i386/R CMD INSTALL -l
"D:/BenSave/R/R-2.15.0/library"
C:\Users\BenSave\TempFolder\RtmpS8df20/downloaded_packages/RMySQL_0.9-3.tar.gz' had
status 1
2: In install.packages("RMySQL", type = "source") :
installation of package ‘RMySQL’ had non-zero exit status
________________________________
From: Uwe Ligges<lig...@statistik.tu-dortmund.de>
To: Ben Rhelp<benrh...@yahoo.co.uk>
Cc: "r-help@r-project.org"<r-help@r-project.org>
Sent: Tuesday, 24 April 2012, 18:22
Subject: Re: [R] Compiling RMySQL on Win7 64bits RS-DBI.c:1:0: sorry,
unimplemented: 64-bit mode not compiled in
On 24.04.2012 16:40, Ben Rhelp wrote:
Hi,
On a Win7 64 bit, I have installed:
*R-15.0 and I am running it in 64bits
*Rtools215.exe*MySQL 5.5.23 64bits
My PATH start with
D:\BenSave\Rtools\bin;D:\BenSave\Rtools\MinGW64\bin;D:\BenSave\R\R-2.15.0\bin;D:\BenSave\Rtools\MinGW\bin;D:\BenSave\Rtools\gcc-4.6.3\bin;
What is D:\BenSave\Rtools\MinGW64\bin? Probably it needs to go out of
the way.
Uwe Ligges
Note that I place MinGW64\bin has I want the package in 64 bits, so just in
case it helps...
To install RMySQL 64 bits, I then followed the steps described in
http://stackoverflow.com/questions/4785933/adding-rmysql-package-to-r-fails,
namely:
1. Install latest RTools from http://cran.r-project.org/bin/windows/Rtools/
2. install MySQL or header and library files of mysql
3. create or edit file C:\Program Files\R\R-2.15\etc\Renviron.site and add
line like MYSQL_HOME=C:/mysql (path to your mysql files)
4. copy libmysql.lib from mysql/lib to mysql/lib/opt to meet dependencies.
5. copy libmysql.dll to C:\Program Files\R\R-2.15\bin directory.
6. run install.packages('RMySQL',type='source') and wait while compilation
will end.
install.packages('RMySQL', type = 'source')
--- Please select a CRAN mirror for use in this session ---
trying URL 'http://cran.ma.imperial.ac.uk/src/contrib/RMySQL_0.9-3.tar.gz'
Content type 'application/x-gzip' length 165363 bytes (161 Kb)
opened URL
downloaded 161 Kb
* installing *source* package 'RMySQL' ...
** package 'RMySQL' successfully unpacked and MD5 sums checked
checking for $MYSQL_HOME... D:/MySQL/forR55
** libs
Warning: this package has a non-empty 'configure.win' file,
so building only the main architecture
gcc -m64 -I"D:/BenSave/R/R-215~1.0/include" -DNDEBUG -I"D:/MySQL/forR55"/include  Â
-I"d:/RCompile/CRANpkg/extralibs64/local/include"    -O2 -Wall -std=gnu99 -mtune=core2 -c
RS-DBI.c -o RS-DBI.o
RS-DBI.c:1:0: sorry, unimplemented: 64-bit mode not compiled in
make: *** [RS-DBI.o] Error 1
ERROR: compilation failed for package 'RMySQL'
* removing 'D:/BenSave/R/R-2.15.0/library/RMySQL'
The downloaded source packages are in
      Â
‘C:\Users\Bvinsonneau\TempFolder\RtmpwPJoVe\downloaded_packages’
Warning messages:
1: running command 'D:/BenSave/R/R-2.15.0/bin/x64/R CMD INSTALL -l
"D:/BenSave/R/R-2.15.0/library"Â Â
C:\Users\BenSave\TempFolder\RtmpwPJoVe/downloaded_packages/RMySQL_0.9-3.tar.gz' had
status 1
2: In install.packages("RMySQL", type = "source") :
 installation of package ‘RMySQL’ had non-zero exit status
I seems to have the same error than the reporter on
http://r.789695.n4.nabble.com/Installing-RMySQL-64-bit-Windows-7-td4466352.html
and Prof Brian Ripley suggests that the reporter should re-read the the
instructions in 'R Installation and
Administration'. I did so but no luck. I am not sure what I am missing.Â
Does anyone have a suggestion?
Regards,
Ben
[[alternative HTML version deleted]]
______________________________________________
R-help@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
______________________________________________
R-help@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
