Dear All I am unhappy to report that rgl_0.92.879 gives the following error: Error : .onLoad failed in loadNamespace() for 'rgl', details: call: dyn.load(file, DLLpath = DLLpath, ...) error: unable to load shared object '/Library/Frameworks/ R.framework/Versions/2.15/Resources/library/rgl/libs/x86_64/aglrgl.so': dlopen(/Library/Frameworks/R.framework/Versions/2.15/Resources/ library/rgl/libs/x86_64/aglrgl.so, 6): Symbol not found: __ZN3gui13OSXGUIFactory12hasEventLoopEv Referenced from: /Library/Frameworks/R.framework/Versions/2.15/ Resources/library/rgl/libs/x86_64/aglrgl.so Expected in: dynamic lookup
Error: package/namespace load failed for rgl >sessionInfo() R version 2.15.0 (2012-03-30) Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit) locale: [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8 attached base packages: [1] splines stats graphics grDevices utils datasets methods base other attached packages: [1] RUnit_0.4.26 bio3d_1.1-3 RCytoscape_1.6.2 XMLRPC_0.2-4 graph_1.34.0 org.Hs.eg.db_2.7.1 RSQLite_0.11.1 DBI_0.2-5 AnnotationDbi_1.18.0 [10] Biobase_2.16.0 BiocGenerics_0.2.0 adegenet_1.3-4 ade4_1.4-17 MASS_7.3-17 cluster_1.14.2 Hmisc_3.9-3 survival_2.36-12 plyr_1.7.1 loaded via a namespace (and not attached): [1] grid_2.15.0 IRanges_1.14.2 lattice_0.20-6 RCurl_1.91-1 stats4_2.15.0 tools_2.15.0 XML_3.9-4 > I don't understand how this happens or how to fix it. Doesn't matter if I use CRAN or R CMD INSTALL from terminal. Terminal gave me no errors when I installed in this way: ~ ¤ R CMD INSTALL /Users/Mark/R_/Packages/rgl_0.92.879.tar * installing to library /Library/Frameworks/R.framework/Versions/2.15/ Resources/library * installing *binary* package rgl ... * DONE (rgl) ~ ¤ Mark On Apr 5, 2012, at 5:06 PM, Grimes Mark wrote: > Dear David, Duncan, and Jochen, and everyone > > I am happy to report that with R version 2.15.0, rgl_0.92.861 now > loads properly. To whoever fixed this, thank you! > > Mark > > >> Below some more observations that might help you locate the problem. >> >> Also sorry for ignoring the posting rules in my last post. I was >> still on 2.14.1, and installing from source from the GUI version of >> R64. Installing from source from R64 GUI still works after the >> upgrade to R 2.14.2, . >> >> The 32 bit versions of R don't work for me anymore, probably >> because I have only installed the 64 bit versions of some libraries >> under Lion. I have never noticed before, since after the problem >> discussed in this thread >> https://stat.ethz.ch/pipermail/r-sig-mac/2010-July/007609.html >> I have been using R64 exclusively. >> >> Also note that installing from the command line (Terminal) version >> of either R32 or R64 gives the error >> >>> checking for glEnd in -lGL... no >>> configure: error: missing required library GL >> >> Presumably, something is wrong with my bash environment and the >> configure script is picking up the wrong gl libraries. >> Installing from source does work after downloading and unzipping >> the rgl tarball with >> >> ./configure --with-gl-libs=/usr/X11/lib --with-gl-includes=/usr/X11/ >> include >> >> >> Jochen >> >> On Mar 28, 2012, at 10:15 AM, Duncan Murdoch wrote: >> >>> On 12-03-27 6:31 PM, Grimes Mark wrote: >>>> Dear People >>>> >>>> I can't figure out how to fix this problem: rgl won't run under R >>>> 2.14.2 (it was working for me before under 2.14.0). The error >>>> message >>>> is: >>> >>> rgl is currently changing fairly rapidly. I'd suggest trying to >>> install again (the current version, as of yesterday, is >>> 0.92.861). If that's not enough, I'd install a binary build >>> (which may be a little old, but at least it built successfully...). >>> >>> Duncan Murdoch >> >> Thanks for your continued efforts Duncan. I had tried compiling >> that version from source and gotten an error but when I attempted >> to install from the current binary image which is now >> rgl_0.92.861.tgz, I got apparent success, it loads without error, >> and the example in ?rgl runs. >> >> -- >> >> David Winsemius, MD >> West Hartford, CT >> > [[alternative HTML version deleted]]
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