I have a presence/absence matrix for which I create a distance matrix and
then perform pco analysis on.
/library(ecodist)
table <- read.table("matrix.pa")
dist <- dist(table, method = "euclidean", diag = FALSE, upper = FALSE)
dist.pco <- pco(dist)/
When I plot the pco analysis of the distance matrix I want to be able to
distinguish between certain characters, for example if the distance matrix
looks like:
http://r.789695.n4.nabble.com/file/n4496217/Screen_shot_2012-03-22_at_17.14.17.png
1, 2, 3 and 4 are the characters to be plotted. I'd like 1 and 2 to appear
as the same shape/ colour on the plot, different from 3 and 4. Is it
possible to do this?
--
View this message in context:
http://r.789695.n4.nabble.com/How-do-you-distinguish-between-characters-on-a-pco-plot-tp4496217p4496217.html
Sent from the R help mailing list archive at Nabble.com.
______________________________________________
R-help@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
