<Depends on which kind of plot you want. If a scatterplot, first plot your "not sepcial" stuff and afterwards add your special data with a call to points() in, e.g. anotehr color. If you want to separate plots, look at then lattice package.

Uwe Ligges


On 14.03.2012 15:16, sybil kennelly wrote:
Hi Guys, this is actually a thread of emails, but for some reason, even
though i am a member, it's withholding my email so i said i would try it
this route instead!...

I appreciate the reading Thank you. If i have:

matrix:
         var1    var2     var3
cell1    x       x         x
cell2    x       x         x
cell3    x       x         x

cell4

.
.
.
.
cell100

and:

vector1<- c("cell1, "cell5",cell19", "cell50", "cell70")

your_data$mycells<- factor(your_data$cells %in% vector1, c("Special",
"NotSpecial"))

So my output will be something like:

[25] Special    Special    Special    Special    Special    Special
   [31] Special    NotSpecial NotSpecial NotSpecial NotSpecial NotSpecial
   [37] NotSpecial NotSpecial NotSpecial NotSpecial

is there a way to plot the data so that my "Special" cells are plotted on
top of my not special cells. The reason is my data may have 10000 not
special points,and i may have 5 special cells, I find I'm not able to see
where they are on my plot because they are being covered by my not special
cells :(

I have been looking around for  "order of factors plotted" , 'order of
levels", "order of factor levels", is this on the right track or can it even
be done?

Syb

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