Hi Uwe,
Thanks for the help. R version 2.14.0 (2011-10-31). The file in question
looks like this (w/ a few minor edits for privacy):
\name{curatedData-package}
\alias{curatedData-package}
\alias{curatedData}
\docType{package}
\title{Cancer Gene Expression Analysis}
\description{The curatedData package provides relevant functions and data
for gene expression analysis in cancer patients.}
\details{
\tabular{ll}{
Package: \tab curatedData\cr
Type: \tab Package\cr
Version: \tab 1.0\cr
Date: \tab 2012-2-03\cr
License: \tab Artistic-2.0\cr
Depends: \tab R (>= 2.10.0), affy\cr
}
}
\author{
Benjamin F. Ganzfried, et al.
Department of Biostatistics and Computational Biology, Dana-Farber Cancer
Institute, Harvard School of Public Health
Maintainer: ben.ganzfr...@gmail.com
}
\description{
Please refer to the following key.
For "summarygrade": low = 1, 2, LMP. High= 3,4,23.
For "summarystage": early = 1,2, 12. late=3,4,23,34.
For "T": Stage (1-4). If multiple stages given (eg 34), use the highest.
For "substage": substage (abcd). For cases like ab, bc, use highest given.
For "G": Grade (1-4): If multiple given, ie 12, 23, use highest given.
For "N": N (0/1): degree of spread to regional lymph nodes.
For "M": M (0/1): presence of metastasis.
For "pltx": patient treated with platin.
For "tax": patient treated with taxol.
For "neo": patient treated with neoadjuvant treatment.
For "primary_therapy_outcome_success": response to any kind of therapy
(including radiation only).
For "chemo_response": platinum resistance: refractory=3mo or less,
resistant=6mo or less, sensitive=12mo or higher.
For "inferred_chemo_response": inferred platinum resistance:
refractory=death in 6mo or less, sensitive=survival for 12mo or more.
For "debulking": amount of residual disease (optimal = <1mm,
suboptimal=>1mm).
}
2012/2/8 Uwe Ligges <lig...@statistik.tu-dortmund.de>
>
>
> On 08.02.2012 18:44, Ben Ganzfried wrote:
>
>> Hi--
>>
>> I googled the above error and found previous postings about this error on
>> the list. I was having a little difficulty implementing the advice
>> though.
>> The suggestions were to use: traceback() and checkRd(). I'm using R in
>> the directory in which the .Rd file with the problem is located, but I'm
>> having difficulty figuring out how to proceed. I've looked through the
>> help pages for traceback() and checkRd(), and would greatly appreciate any
>> advice for how to find the errors and fix them.
>>
>> The specific error I am getting when trying to check my package is:
>>
>> * checking Rd files ... WARNING
>> Error in Rd[[which]] : subscript out of bounds
>>
>
> Which R version (assuming R-2.14.1 or R-devel)? Can you make the file
> available?
>
> Uwe Ligges
>
>
>
>> problem found in ‘curatedData-package.Rd’
>>
>> Thanks in advance!
>>
>> Ben
>>
>> [[alternative HTML version deleted]]
>>
>>
>>
>>
>> ______________________________**________________
>> R-help@r-project.org mailing list
>> https://stat.ethz.ch/mailman/**listinfo/r-help<https://stat.ethz.ch/mailman/listinfo/r-help>
>> PLEASE do read the posting guide http://www.R-project.org/**
>> posting-guide.html <http://www.R-project.org/posting-guide.html>
>> and provide commented, minimal, self-contained, reproducible code.
>>
>
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