Have you tried Bioconductor (www.bioconductor.org <http://www.bioconductor.org/>)? Spencer
On 2/5/2012 10:36 PM, MLSC wrote: > Hi all, > > I need your opinion about using R-Rapache to build a knowlegde base to > bioinformatics field. > > I have copious amount of genotype information (some few million records) > and would like to store it in MySQL database. Then, using RMySQL connector > I would like to use it for further analysis using R over a web interface. > The web interface which I am thnking off, just does not serve the purose of > statistical analysis, it should also serve as displaying data in grids and > interactive maps etc on web interface. > > I had thought of doing the same using python-MySQLdb to store data and then > R-rpy for further statistical analysis. But as R is now directly made to > work on web I am very much excited about RApache project. Very recently I > was introducing Rapache project and concept of building knowledge base > using Rapache-R-MySQL combination to our team memebrs, Unfortunately few > memebers were not that happy with using R directly in middle tier. There > were serious comments about R that it is slow and generating plots on the > fly wont be too fast. there was also discussion about maturity of RMySQL > database connector, i mean fastness of querying MySQL will vary > significantly with RMySQL when campared to MySQLdb connector? > > It would be nice if you give me a detailed opinion on this. > > Thanking you all in anticipation. > > Regards, > mlsc > > [[alternative HTML version deleted]] > > ______________________________________________ > R-help@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting guidehttp://www.R-project.org/posting-guide.html > and provide commented, minimal, self-contained, reproducible code. > -- Spencer Graves, PE, PhD President and Chief Technology Officer Structure Inspection and Monitoring, Inc. 751 Emerson Ct. San José, CA 95126 ph: 408-655-4567 web:www.structuremonitoring.com -- Spencer Graves, PE, PhD President and Chief Technology Officer Structure Inspection and Monitoring, Inc. 751 Emerson Ct. San José, CA 95126 ph: 408-655-4567 web: www.structuremonitoring.com [[alternative HTML version deleted]]
______________________________________________ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
