Hi,
I have a list of files in one of my working directories:
"chr17.chunk1.dose.fvd"
"chr17.chunk1.dose.fvi"
"chr17.chunk1.prob.fvd"
"chr17.chunk1.prob.fvi"
...........
.........
........
"chr17.chunk10.dose.fvd"
"chr17.chunk10.dose.fvi"
"chr17.chunk10.prob.fvd"
"chr17.chunk10.prob.fvi"
And I am using the *.dose files to convert the data into a text file.
For a singlefile, the following works:
chr17chunk1dose <- databel("chr17.chunk1.dose")
databel2text(databel=chr17chunk1dose, file="chr1_chunk1.dose.txt",
NAString="NA", row.names=TRUE, col.names=TRUE, transpose=FALSE)
I am trying to do the conversion inside a loop for all the files at a time but
can't figure out how to do it. Any hep is appreciated.
#### I am trying something like this:
flies <- list.files(pattern="dose")
for(i in files){
dose <- databel(i)[[1]]
databel2text <- (databel = dose, file="chr17_chunk1.dose.txt",
NAString="NA", row.names=TRUE, col.names=TRUE, transpose=FALSE)
}
########
Thanks,
Debs
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