On 06.12.2011 18:27, Luc Villandre wrote:
Hello,
I do think so.
###
[villandre@stat04 lars]$ pwd
/home/villandre/R/x86_64-redhat-linux-gnu-library/2.11/lars
[villandre@stat04 lars]$ ls
data DESCRIPTION help html INDEX libs Meta NAMESPACE R
###
I re-installed it and I still get the same error message.
####
install.packages("lars", lib = "~/R/x86_64-redhat-linux-gnu-library/2.11")
trying URL
'http://software.rc.fas.harvard.edu/mirrors/R/src/contrib/lars_0.9-8.tar.gz'
Content type 'application/x-gzip' length 172011 bytes (167 Kb)
opened URL
==================================================
downloaded 167 Kb
* installing *source* package ‘lars’ ...
** libs
gfortran -m64 -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions
-fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -c delcol.f -o
delcol.o
gcc -m64 -std=gnu99 -shared -L/usr/local/lib64 -o lars.so delcol.o -lgfortran
-lm -L/usr/lib64/R/lib -lR
installing to
/mnt/prism/s20/villandre/R/x86_64-redhat-linux-gnu-library/2.11/lars/libs
** R
** data
** preparing package for lazy loading
** help
*** installing help indices
converting help for package ‘lars’
finding HTML links ... done
cv.lars html
diabetes html
lars-internal html
lars html
plot.lars html
predict.lars html
summary.lars html
** building package indices ...
** testing if installed package can be loaded
Loaded lars 0.9-8
* DONE (lars)
The downloaded packages are in
‘/tmp/RtmphxCj4j/downloaded_packages’
library(lars, lib.loc = "~/R/x86_64-redhat-linux-gnu-library/2.11")
Error : .onLoad failed in loadNamespace() for 'lars', details:
call: cat("Loaded lars", utils::installed.packages()["lars", "Version"],
error: subscript out of bounds
I haven't looked closely enough before:
The culprit is in lars which has:
cat("Loaded lars", utils::installed.packages()["lars", "Version"],
and hence only looks at the default search path to report its version
while you supplied a different one.
Thus, it is a bug in the package you should report to its maintainer.
I the meantime as a workaround (and maybe more convenient anyway): set
the location of your library using .libPaths() before loading the package.
Uwe Ligges
Error: package/namespace load failed for ‘lars’
####
It is the first time I get such an error message when trying to load a package.
It would seem that the problem is with
###
cat("Loaded lars", utils::installed.packages()["lars", "Version"]
###
Is there a way to circumvent this problem (e.g. attribute an arbitrary value to
utils::installed.packages()["lars", "Version"])?
Thanks for your help,
Luc
________________________________________
From: Uwe Ligges [lig...@statistik.tu-dortmund.de]
Sent: Tuesday, December 06, 2011 8:01 AM
To: Luc Villandre
Cc: r-help
Subject: Re: [R] Can't load package 'lars'
On 06.12.2011 03:33, Luc Villandre wrote:
Hi,
I installed package 'lars' earlier tonight and did not get any sort of
error message.
###
** building package indices ...
** testing if installed package can be loaded
Loaded lars 0.9-8
* DONE (lars)
###
However, when I try to load it, I get
###
> library(lars, lib.loc = "~/R/x86_64-redhat-linux-gnu-library/2.11")
Are you sure it is installed at the location you specified?
Uwe Ligges
Error : .onLoad failed in loadNamespace() for 'lars', details:
call: cat("Loaded lars", utils::installed.packages()["lars", "Version"],
error: subscript out of bounds
Error: package/namespace load failed for ‘lars’
###
Session info:
###
> sessionInfo()
R version 2.14.0 (2011-10-31)
Platform: x86_64-redhat-linux-gnu (64-bit)
locale:
[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
[3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
[5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
[7] LC_PAPER=C LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
loaded via a namespace (and not attached):
[1] rpart_3.1-50 tools_2.14.0
###
I get the same error message when I try to load it on another machine:
###
> library("lars",lib.loc = "~/R/i686-pc-linux-gnu-library/2.12")
Error : .onLoad failed in loadNamespace() for 'lars', details:
call: cat("Loaded lars", utils::installed.packages()["lars", "Version"],
error: subscript out of bounds
Error: package/namespace load failed for 'lars'
###
Session info:
###
> sessionInfo()
R version 2.13.1 (2011-07-08)
Platform: i686-pc-linux-gnu (32-bit)
locale:
[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
[3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
[5] LC_MONETARY=C LC_MESSAGES=en_US.UTF-8
[7] LC_PAPER=en_US.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
loaded via a namespace (and not attached):
[1] tools_2.13.1
###
Is there at least a way to circumvent the problem?
Thank you for your help,
Luc Villandre
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______________________________________________
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PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
