Hi Michael,
Thanks for your response. Using the binary seems to solve partially. I am
able to install (I think!) RCurl but not able to load the library. Below is
the info you required and the error while loading RCurl.
*> sessionInfo()*
R version 2.13.2 (2011-09-30)
Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit)
locale:
[1] en_US.UTF-8/en_US.UTF-8/C/C/en_US.UTF-8/en_US.UTF-8
attached base packages:
[1] stats graphics grDevices utils datasets methods base
*> install.packages("RCurl")*
trying URL '
http://watson.nci.nih.gov/cran_mirror/bin/macosx/leopard/contrib/2.13/RCurl_1.7-0.tgz
'
Content type 'application/octet-stream' length 680511 bytes (664 Kb)
opened URL
==================================================
downloaded 664 Kb
The downloaded packages are in
/var/folders/a6/a60JdPfrHC0ZAizZWyNM-E+++TI/-Tmp-//RtmpYE7JLJ/downloaded_packages
*> library(RCurl)*
Loading required package: bitops
Error in dyn.load(file, DLLpath = DLLpath, ...) :
unable to load shared object
'/Library/Frameworks/R.framework/Versions/2.13/Resources/library/RCurl/libs/x86_64/RCurl.so':
dlopen(/Library/Frameworks/R.framework/Versions/2.13/Resources/library/RCurl/libs/x86_64/RCurl.so,
6): Library not loaded:
@rpath/R.framework/Versions/2.13/Resources/lib/libR.dylib
Referenced from:
/Library/Frameworks/R.framework/Versions/2.13/Resources/library/RCurl/libs/x86_64/RCurl.so
Reason: image not found
Error: package/namespace load failed for 'RCurl'
Warning: dependency Rcompression is not available
also installing the dependency XML
Seems like now I need 'Rcompression'. I googled this and found a
Rcompression package 'zlib' (http://www.omegahat.org/Rcompression/).
However the site says that "zlib for Mac OS X: zlib is already included as
part of Mac OS X".
I am wondering what to do? To my bliss, why did the previous R version
oblivious of these issues!
Really appreciate any hep.
SIncerely,
Hari
On Tue, Nov 15, 2011 at 11:33 PM, R. Michael Weylandt <
michael.weyla...@gmail.com> wrote:
> Yes, you probably need some sort of C compiler, but why can't you just
> download the appropriate binary directly? I just did on OS X 10.5.8
> (admittedly for R 2.13.2, not 2.14) with no problems. The output of
>
> sessionInfo()
> install.packages("RCurl")
>
> if you don't mind please.
>
> Thanks,
>
> Michael
>
> On Tue, Nov 15, 2011 at 2:12 PM, Hari Easwaran <hariharan...@gmail.com>
> wrote:
> > Dear all,
> > I am trying to install a package from bioconductor (biomaRt) for which I
> > need the RCurl package. I get the following main error message when I try
> > to install RCurl (and its dependencies).
> >
> > configure: error: no acceptable C compiler found in $PATH
> > See `config.log' for more details.
> > ERROR: configuration failed for package RCurl
> >
> > I searched for possible solutions and read in some online mailing list
> that
> > I might have to install Xcode to install the gcc compiler. I am not sure
> if
> > I should do this because I have installed RCurl in previous versions of R
> > without any problems (on this same computer). I upgraded to the latest R
> (R
> > version 2.14.0) and faced this problem. So I downgraded to R version
> 2.13.2
> > and still cannot install RCurl. I think my last successful installation
> of
> > RCurl was with R version 2.11.
> >
> > Following is the complete error message and my R version details.
> > I really appreciate any help or suggestions.
> >
> > Sincerely,
> > Hari
> >
> > trying URL '
> > http://watson.nci.nih.gov/cran_mirror/src/contrib/XML_3.4-3.tar.gz'
> > Content type 'application/octet-stream' length 906364 bytes (885 Kb)
> > opened URL
> > ==================================================
> > downloaded 885 Kb
> >
> > trying URL '
> > http://watson.nci.nih.gov/cran_mirror/src/contrib/RCurl_1.7-0.tar.gz'
> > Content type 'application/octet-stream' length 813252 bytes (794 Kb)
> > opened URL
> > ==================================================
> > downloaded 794 Kb
> >
> > * installing *source* package XML ...
> > checking for gcc... no
> > checking for cc... no
> > checking for cl.exe... no
> > configure: error: no acceptable C compiler found in $PATH
> > See `config.log' for more details.
> > ERROR: configuration failed for package XML
> > * removing
> > /Library/Frameworks/R.framework/Versions/2.13/Resources/library/XML
> > * installing *source* package RCurl ...
> > checking for curl-config... /usr/bin/curl-config
> > checking for gcc... no
> > checking for cc... no
> > checking for cc... no
> > checking for cl... no
> > configure: error: no acceptable C compiler found in $PATH
> > See `config.log' for more details.
> > ERROR: configuration failed for package RCurl
> > * removing
> > /Library/Frameworks/R.framework/Versions/2.13/Resources/library/RCurl
> > * restoring previous
> > /Library/Frameworks/R.framework/Versions/2.13/Resources/library/RCurl
> >
> > The downloaded packages are in
> >
> /private/var/folders/a6/a60JdPfrHC0ZAizZWyNM-E+++TI/-Tmp-/RtmpVjBcvX/downloaded_packages
> >
> > [[alternative HTML version deleted]]
> >
> >
> > ______________________________________________
> > R-help@r-project.org mailing list
> > https://stat.ethz.ch/mailman/listinfo/r-help
> > PLEASE do read the posting guide
> http://www.R-project.org/posting-guide.html
> > and provide commented, minimal, self-contained, reproducible code.
> >
> >
>
[[alternative HTML version deleted]]
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