clogit needs to spell out formula plus strata, you can try modify the code
...
d2=d[,c(mols,'group','Age','strata')]
fo<-as.formula(paste(paste('group~','Age',sep=''),'strata(strata)',sep='+'))
log.reg<-clogit(fo,data=d2)
...
Weidong
On Mon, Nov 7, 2011 at 10:19 AM, 1Rnwb <sbpuro...@gmail.com> wrote:
> I would like to know if clogit function can be used as below
> clogit(group~., data=dataframe)
>
> When I try to use in above format it takes a long time, I would appreciate
> some pointers to get multiple combinations tested.
>
> set.seed(100)
> d=data.frame(x=rnorm(20)+5,
> x1=rnorm(20)+5,
> x2=rnorm(20)+5,
> x3=rnorm(20)+5,
> x4=rnorm(20)+5,
> x5=rnorm(20)+5,
> x6=rnorm(20)+5,
> x7=rnorm(20)+5,
> x8=rnorm(20)+5,
> group=rep(c(1,2),10), Age=rnorm(20)+35,strata=c(rep(1,10), rep(2,10)))
>
> nam=names(d)[1:9]
> results <- c("Protein", "OR", "p-val")
> pc3=combinations(n=length(nam),r=2)
>
> for (len in 1:dim(pc3)[2])
> {
> prs=pc3[len,]
> mols=nam[prs]
> d2=d[,c(mols,'group','Age','strata')]
> log.reg<-clogit(group~.,data=d2)
> a = summary(log.reg)$conf.int
> z= summary(log.reg)$coefficients[1,4] #ncol in coefficients is 3 * number
> of parameters
> pval = 2*pnorm(-abs(z))
> res2 = c(paste('IL8+',molecule,sep=''), paste (round(a[1,1],2), " (" ,
> round(a[1,3],2), " - " , round(a[1,4],2), ")" , sep=""), pval)
> results = rbind (results ,res2 )
> }
>
> Thanks
> Sharad
>
> --
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>
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