On Thu, 6 Oct 2011, francogrex wrote:

x <- runif(100)
y <- runif(100)
ks.test(x,y)

      Two-sample Kolmogorov-Smirnov test

data:  x and y
D = 0.11, p-value = 0.5806
alternative hypothesis: two-sided

ok I expected that, but:

ks.test(runif(100), "runif")

       One-sample Kolmogorov-Smirnov test

data:  runif(100)
D = 0.9106, p-value < 2.2e-16
alternative hypothesis: two-sided

How come?

Because you didn't read the docs, or didn't follow them, or mistyped. The docs say

       y: either a numeric vector of data values, or a character string
          naming a cumulative distribution function or an actual
          cumulative distribution function such as 'pnorm'.  Only
          continuous CDFs are valid.

So you would want

ks.test(runif(100), "punif")

Best,
Z

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