> Any comments are very welcome,
So I give it a shot, although I don't have answers but only some ideas which
avenues I would explore, not being an
expert at all:
1. I would try to be more restrictive with the columns used for merge, trying
something like
m1 <- merge( x, y, by.x = "V1", by.y = "V1", all = TRUE )
2. It may be an option to use match() directly:
indices <- match( y$V1, x$V1 )
That should give you a vector of 300,000 indices mapping the y values to their
corresponding x records. I assume that
there is always one record in y matching one record in x. You would still need
to write some code to add the
corresponding y values to a new column in x.
3. If that fails, and nobody else has a better idea, I would consider using a
database engine for the job.
Again, no expert advice, just a few ideas!
Rgds,
Rainer
On Tuesday 04 October 2011 01:01:45 Aurélien PHILIPPOT wrote:
> Dear all,
> I am new in R and I have been faced with the following problem, that slows
> me down a lot. I am short of ideas to circumvent it. So, any help would be
> highly appreciated:
>
> I have 2 dataframes x and y. x is very big (70 million observations),
> whereas y is smaller (300000 observations).
> All the observations of y are present in x. But y has one additional
> variable that I would like to incorporate to the dataframe x.
>
> For instance, imagine they have the following variable names:
> colnames(x)<- c("V1", "V2", "V3", "V4") and colnames(y)<- c("V1", "V2",
> "V5")
>
> -Since the observations of y are present in x, my strategy was to merge x
> and y so that the dataframe x would get the values of the variable V5 for
> the observations that are both in x and y.
>
> -So, I did the following:
> dat<- merge(x, y, all=TRUE).
>
> On a small example, it works fine. The only problem is that when I apply it
> to my big dataframe x, it really take for ever (several days and not done
> yet) and I have a very fast computer. So, I don't know whether I should
> stop now or keep on waiting.
>
> Does anyone have any idea to perform this operation in a more efficient way
> (in terms of computation time)?
> In addition, does anyone know how to incoporate some sort of counter in a
> program to check what how much work has been done at a given point of time?
>
> Any comments are very welcome,
> Thanks,
>
> Best,
> Aurelien
>
> [[alternative HTML version deleted]]
>
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