On 11-09-16 4:48 PM, Tarca, Adi wrote:
Hi all,
I am trying to run R CMD check on a package which passes R CMD INSTALL.
The check stops because of a parsing problem in the example of a given function
at this line:
return(res[res$ID %in% list$targetGeneSets,])
The code is ok, since it runs if I paste it in R.
Is this a known parsing issue in R CMD check?
Percent signs in Rd files are comments unless they are escaped. The
parser sees your code as
return(res[res$ID
Rewrite it as
return(res[res$ID \%in\% list$targetGeneSets,])
Duncan Murdoch
Thanks,
Adi
sessionInfo()
R version 2.13.0 (2011-04-13)
Platform: x86_64-unknown-linux-gnu (64-bit)
Thanks,
Adi Laurentiu TARCA, Ph.D.
Assistant Professor (Research),
Department of Computer Science& Center for Molecular Medicine and Genetics,
Wayne State University,
Director, Bioinformatics and Computational Biology Unit, Perinatology Research
Branch (NICHD),
3990 John R., Office 4809,
Detroit, Michigan 48201
Tel: 1-313-5775305
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and provide commented, minimal, self-contained, reproducible code.
