Hello, yes, thanks!
Also,how do I get the cutoff similarity value which was used for clustering when I cut the tree at a specific heigt? Best regards, Madeleine On Tue, 2011-09-13 at 09:39 -0700, Mikkel Grum wrote: > plot(clust) > rect.hclust(clust, h = 0.65) > > > > ----- Original Message ----- > From: Madeleine Seeland <madeleine.seel...@in.tum.de> > To: r-help@r-project.org > Cc: > Sent: Tuesday, September 13, 2011 9:25 AM > Subject: [R] help with hclust and cutree > > Hello, > > I would like to cut a hclust tree into several groups at a specific > similarity. I assume this can be achieved by specifying the "h" > argument > with the specified similarity, e.g.: > > clust<-hclust(dist,"average") > cut<-cutree(clust,h=0.65) > > Now, I would like to draw rectangles around the branches of the > dendrogram highlighting the corresponding clusters, as is done by the > function rect.hclust(). How can I achieve this with the ouput of cutree? > > I would appreciate your help! > > Best regards, > Madeleine > > ______________________________________________ > R-help@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting guide http://www.R-project.org/posting-guide.html > and provide commented, minimal, self-contained, reproducible code. > -- Dipl.-Wirt.-Inf. Madeleine Seeland Technische Universität München Institut für Informatik Lehrstuhl I12 - Bioinformatik Boltzmannstr. 3 85748 Garching b. München, Germany Room: MI 01.09.040 Phone: +49 (89) 289-19443 Email: madeleine.seel...@in.tum.de Web: http://wwwkramer.in.tum.de/people/seeland ______________________________________________ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
