Thanks! That's seemed to partially work, but now when I try to load it
in R I get:
library(polsplineRS)
Error in library.dynam("polspline", pkg, lib) :
shared library 'polspline' not found
Error in library(polsplineRS) : .First.lib failed for 'polsplineRS'
-----Original Message-----
From: Duncan Murdoch [mailto:[EMAIL PROTECTED]
Sent: Friday, March 07, 2008 1:36 PM
To: Shewcraft, Ryan
Cc: r-help@r-project.org
Subject: Re: [R] Trouble with R CMD check
On 3/7/2008 1:21 PM, Shewcraft, Ryan wrote:
> Friends,
>
> I changed one line of a package at the source level and then rebuilt
it.
> When I run R CMD check, I get an error:
You're getting lots of warnings from the compiler; presumably those have
nothing to do with you. Then at the end you're getting an error because
you haven't set up your R toolset completely:
hhc: not found
This is the Microsoft Help Workshop help compiler. Either you didn't
install it, or didn't put it in the right place. But you can avoid the
error by just not building compiled help, using
Rcmd install --docs=normal polsplineRS
Duncan Murdoch
>
> installing R.css in C:/polsplineRS.Rcheck
>
>
> ---------- Making package polsplineRS ------------
> adding build stamp to DESCRIPTION
> making DLL ...
> making hareall.d from hareall.c
> making heftall.d from heftall.c
> making lsdall.d from lsdall.c
> making lspecall.d from lspecall.c
> making nlsd.d from nlsd.c
> making polyall.d from polyall.c
> making polymars.d from polymars.c
> gcc -Ic:/PROGRA~1/R/R-24~1.1/include -Wall -O2 -std=gnu99 -c
> hareall.c -o hareall.o
> hareall.c: In function `gremdim':
> hareall.c:2127: warning: unused variable `x'
> hareall.c: In function `compall':
> hareall.c:1656: warning: 'lala' might be used uninitialized in this
> function
> hareall.c: In function `newton':
> hareall.c:1876: warning: 'rall' might be used uninitialized in this
> function
> hareall.c: In function `search':
> hareall.c:646: warning: 'iloc' might be used uninitialized in this
> function
> hareall.c:646: warning: 'lloc' might be used uninitialized in this
> function
> hareall.c:646: warning: 'uloc' might be used uninitialized in this
> function
> hareall.c: In function `adders':
> hareall.c:529: warning: 'crit1' might be used uninitialized in this
> function
> hareall.c: In function `share':
> hareall.c:2126: warning: 'bb1' might be used uninitialized in this
> function
> hareall.c:2126: warning: 'bt1' might be used uninitialized in this
> function
> hareall.c:2126: warning: 'bb2' might be used uninitialized in this
> function
> hareall.c:2126: warning: 'bw' might be used uninitialized in this
> function
> hareall.c:2127: warning: 'wald' might be used uninitialized in this
> function
> hareall.c: In function `sphare':
> hareall.c:3417: warning: 's' might be used uninitialized in this
> function
> hareall.c: At top level:
> hareall.c:132: warning: 'iigvector' declared `static' but never
defined
> gcc -Ic:/PROGRA~1/R/R-24~1.1/include -Wall -O2 -std=gnu99 -c
> heftall.c -o heftall.o
> heftall.c: In function `sheft':
> heftall.c:301: warning: 'nintx' might be used uninitialized in this
> function
> heftall.c:301: warning: 'addi' might be used uninitialized in this
> function
> heftall.c:1848: warning: 'loloc' might be used uninitialized in this
> function
> heftall.c:1848: warning: 'uploc' might be used uninitialized in this
> function
> heftall.c:1848: warning: 'nowloc1' might be used uninitialized in this
> function
> gcc -Ic:/PROGRA~1/R/R-24~1.1/include -Wall -O2 -std=gnu99 -c
> lsdall.c -o lsdall.o
> lsdall.c: In function `knotplace':
> lsdall.c:1890: warning: 'ia' might be used uninitialized in this
> function
> lsdall.c:1895: warning: 'u3' might be used uninitialized in this
> function
> lsdall.c:1895: warning: 'u4' might be used uninitialized in this
> function
> lsdall.c: In function `liter':
> lsdall.c:369: warning: 'zerror' might be used uninitialized in this
> function
> lsdall.c:370: warning: 'newlikelihood' might be used uninitialized in
> this function
> lsdall.c: In function `logcensor':
> lsdall.c:51: warning: 'xnknots' might be used uninitialized in this
> function
> lsdall.c:55: warning: 'xczheta' might be used uninitialized in this
> function
> lsdall.c: In function `pqlsd':
> lsdall.c:2908: warning: 'j' might be used uninitialized in this
> function
> lsdall.c: At top level:
> lsdall.c:1458: warning: 'fun2' defined but not used
> lsdall.c:1471: warning: 'fun48' defined but not used
> gcc -Ic:/PROGRA~1/R/R-24~1.1/include -Wall -O2 -std=gnu99 -c
> lspecall.c -o lspecall.o
> lspecall.c: In function `tsadd':
> lspecall.c:626: warning: 'b2' might be used uninitialized in this
> function
> gcc -Ic:/PROGRA~1/R/R-24~1.1/include -Wall -O2 -std=gnu99 -c
nlsd.c
> -o nlsd.o
> nlsd.c: In function `ludcmp':
> nlsd.c:695: warning: 'imax' might be used uninitialized in this
> function
> nlsd.c: In function `setupspace':
> nlsd.c:1717: warning: 'm' might be used uninitialized in this function
> nlsd.c: In function `startspace':
> nlsd.c:1838: warning: 'l' might be used uninitialized in this function
> nlsd.c: In function `pompall':
> nlsd.c:1158: warning: 'f' might be used uninitialized in this function
> nlsd.c: In function `nlsd':
> nlsd.c:747: warning: 'nowloc1' might be used uninitialized in this
> function
> nlsd.c:747: warning: 'loloc' might be used uninitialized in this
> function
> nlsd.c:747: warning: 'uploc' might be used uninitialized in this
> function
> gcc -Ic:/PROGRA~1/R/R-24~1.1/include -Wall -O2 -std=gnu99 -c
> polyall.c -o polyall.o
> polyall.c: In function `poly':
> polyall.c:3121: warning: 'okd' might be used uninitialized in this
> function
> polyall.c:2777: warning: 'aj' might be used uninitialized in this
> function
> polyall.c:2777: warning: 'ak' might be used uninitialized in this
> function
> polyall.c:2777: warning: 'sj' might be used uninitialized in this
> function
> polyall.c:2777: warning: 'sk' might be used uninitialized in this
> function
> polyall.c:2777: warning: 'bbi' might be used uninitialized in this
> function
> polyall.c:2777: warning: 'bbj' might be used uninitialized in this
> function
> polyall.c:2777: warning: 'bbk' might be used uninitialized in this
> function
> polyall.c:2778: warning: 'baj' might be used uninitialized in this
> function
> polyall.c:2778: warning: 'bak' might be used uninitialized in this
> function
> polyall.c:2778: warning: 'bsj' might be used uninitialized in this
> function
> polyall.c:2778: warning: 'bsk' might be used uninitialized in this
> function
> polyall.c:395: warning: 'iloc' might be used uninitialized in this
> function
> polyall.c:395: warning: 'lloc' might be used uninitialized in this
> function
> polyall.c:395: warning: 'uloc' might be used uninitialized in this
> function
> polyall.c: In function `proj':
> polyall.c:1794: warning: 'k' might be used uninitialized in this
> function
> polyall.c:1794: warning: 'k0' might be used uninitialized in this
> function
> polyall.c:1794: warning: 'k1' might be used uninitialized in this
> function
> polyall.c:1794: warning: 'k2' might be used uninitialized in this
> function
> polyall.c:1794: warning: 'k3' might be used uninitialized in this
> function
> polyall.c:1794: warning: 'k4' might be used uninitialized in this
> function
> polyall.c:1794: warning: 'k5' might be used uninitialized in this
> function
> polyall.c:1794: warning: 'k6' might be used uninitialized in this
> function
> polyall.c: In function `spoly':
> polyall.c:945: warning: 'numbers' might be used uninitialized in this
> function
> polyall.c:946: warning: 'ranges' might be used uninitialized in this
> function
> polyall.c:948: warning: 'tdata' might be used uninitialized in this
> function
> polyall.c:948: warning: 'zdata' might be used uninitialized in this
> function
> polyall.c:949: warning: 'loss' might be used uninitialized in this
> function
> polyall.c:1575: warning: 'bestl' might be used uninitialized in this
> function
> polyall.c:1575: warning: 'bestu' might be used uninitialized in this
> function
> gcc -Ic:/PROGRA~1/R/R-24~1.1/include -Wall -O2 -std=gnu99 -c
> polymars.c -o polymars.o
> polymars.c: In function `fit_model':
> polymars.c:513: warning: unused variable `intercept_sd'
> polymars.c: In function `find_best_candidate':
> polymars.c:1361: warning: unused variable `dok1'
> polymars.c:1361: warning: unused variable `dok2'
> polymars.c: In function `initial_model':
> polymars.c:2585: warning: unused variable `mesh_index'
> polymars.c: In function `lsame':
> polymars.c:3925: warning: suggest parentheses around && within ||
> polymars.c:3926: warning: suggest parentheses around && within ||
> polymars.c:3929: warning: suggest parentheses around && within ||
> polymars.c:3930: warning: suggest parentheses around && within ||
> polymars.c: In function `dspmv':
> polymars.c:4963: warning: suggest parentheses around && within ||
> polymars.c: In function `condition':
> polymars.c:6566: warning: unused variable `tt'
> polymars.c: In function `fit_as_candidate':
> polymars.c:1046: warning: 'knot1_value' might be used uninitialized in
> this function
> polymars.c:1046: warning: 'knot2_value' might be used uninitialized in
> this function
> polymars.c: In function `find_best_candidate':
> polymars.c:1686: warning: 'current_predictor_values2' might be used
> uninitialized in this function
> polymars.c:1686: warning: 'knot1_value' might be used uninitialized in
> this function
> polymars.c:1686: warning: 'knot2_value' might be used uninitialized in
> this function
> polymars.c: In function `fit_model':
> polymars.c:2164: warning: 'trailing_column' might be used
> uninitialized in this function
> polymars.c:2586: warning: 'knot_1_value' might be used uninitialized
> in this function
> polymars.c:2586: warning: 'knot_2_value' might be used uninitialized
> in this function
> polymars.c:2591: warning: 'means' might be used uninitialized in this
> function
> polymars.c:2591: warning: 'SDs' might be used uninitialized in this
> function
> polymars.c: In function `polymars':
> polymars.c:358: warning: 'mesh' might be used uninitialized in this
> function
> polymars.c:6318: warning: 'mesh' might be used uninitialized in this
> function
> polymars.c:6318: warning: 'mesh' might be used uninitialized in this
> function
> g77 -O2 -Wall -c allpack.f -o allpack.o
> allpack.f: In subroutine `xdsidi':
> In file included from allpack.f:0:
> allpack.f:476: warning: 'ten' might be used uninitialized in this
> function windres --include-dir c:/PROGRA~1/R/R-24~1.1/include -i
> polsplineRS_res.rc -o polsplineRS_res.o gcc -shared -s -o
> polsplineRS.dll polsplineRS.def hareall.o heftall.o lsdall.o
> lspecall.o nlsd.o polyall.o polymars.o allpack.o polsplineRS_res.o
> -Lc:/PROGRA~1/R/R-24~1.1/bin -Lc:/PROGRA~1/R/R-24~1.1/bin -lRblas
> -lg2c -lg2c -lR
> ... DLL made
> installing DLL
> installing R files
> installing man source files
> installing indices
> installing help
> >>> Building/Updating help pages for package 'polsplineRS'
> Formats: text html latex example chm
> beta.polyclass text html latex example
chm
> clspec text html latex example
chm
> cpolyclass text html latex example
chm
> design.polymars text html latex example
chm
> dhare text html latex example
chm
> dheft text html latex example
chm
> dlogspline text html latex example
chm
> doldlogspline text html latex example
chm
> hare text html latex example
chm
> heft text html latex example
chm
> logspline text html latex example
chm
> lspec text html latex example
chm
> oldlogspline text html latex example
chm
> persp.polymars text html latex
chm
> plot.hare text html latex example
chm
> plot.heft text html latex example
chm
> plot.logspline text html latex example
chm
> plot.lspec text html latex example
chm
> plot.oldlogspline text html latex example
chm
> plot.polyclass text html latex example
chm
> plot.polymars text html latex example
chm
> polyclass text html latex example
chm
> polymars text html latex example
chm
> predict.polymars text html latex example
chm
> summary.hare text html latex example
chm
> summary.heft text html latex example
chm
> summary.logspline text html latex example
chm
> summary.lspec text html latex example
chm
> summary.oldlogspline text html latex example
chm
> summary.polyclass text html latex example
chm
> summary.polymars text html latex example
chm
> testhare text html latex example
chm
> unstrip text html latex example
chm
> xhare text html latex
chm
> hhc: not found
> cp: cannot stat
> `C:/polsplineRS.Rcheck/00_pkg_src/polsplineRS/chm/polsplineRS.chm': No
> such file or directory
> make[1]: *** [chm-polsplineRS] Error 1
> make: *** [pkg-polsplineRS] Error 2
> *** Installation of polsplineRS failed ***
>
> Removing 'C:/polsplineRS.Rcheck/polsplineRS'
>
> I am slowly figuring out all of this R stuff so I apologize for
> continually bothering everyone.
>
> Thanks,
>
> Ryan Shewcraft
> The Blackstone Group, L.P.
>> 345 Park Avenue, 28th Floor
>> New York, NY 10154
>> P: 212-583-5147
> F: 646-253-7633
>
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