Hello,
I am trying to plot SADIE red-blue plots of cluster indicies using
filled.contour. I want a plot which only has three bins for the data:
<-1.5, -1.5 - 1.5, >1.5, but I am having trouble getting there.
example
X1 X2 X3 X4 X5
1 -5 -4.5 1.0 4.5 6
2 -3 -2.0 1.2 -1.0 3
3 0 0.0 0.0 -0.5 -1
4 -2 -3.0 1.0 1.5 3
5 -6 -2.0 0.5 3.0 2
example<-as.matrix(example)
filled.contour(example)
filled.contour(example,levels=seq(min(example),max(example)),
color.palette=colorRampPalette(c("blue","white","red")))
I tried this to get just three bins, but data outside that range doesn't
plot.
seq(-4.5,4.5,by=3)
[1] -4.5 -1.5 1.5 4.5
filled.contour(example, levels=seq(-4.5,4.5,by=3),
color.palette=colorRampPalette(c("blue","white","red")))
I increased the range but I now have two shades of red and blue, when
what I really want is one shade of each
seq(-7.5,7.5,by=3)
[1] -7.5 -4.5 -1.5 1.5 4.5 7.5
filled.contour(example, levels=seq(-7.5,7.5,by=3),
color.palette=colorRampPalette(c("blue","white","red")))
Is there a way to either
1) Create unequal bins, so all data below -1.5 is blue and all data
above 1.5 red
Or
2) colour more than one bin the same shade
Many thanks,
Dan.
Dr Dan Carpenter | Post-doctoral Research Assistant | Soil Biodiversity
Group | Entomology Department | Natural History Museum | London | SW7
5BD | 0207 942 5208 | d.carpen...@nhm.ac.uk
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