I have a data frame (narrow) with 431 rows and 6 columns containing information
on chromosome, position, lod1, lod2, lod3, lod4, looking like this:
> narrow
chr pos lod1 lod2 lod3 lod4
1 1 3.456 -0.025 -0.003 -0.209 -0.057
2 1 5.697 -0.029 -0.005 -0.200 -0.058
3 1 8.434 -0.049 -0.012 -0.247 -0.092
4 1 9.466 -0.074 -0.025 -0.300 -0.136
5 1 9.706 -0.074 -0.025 -0.298 -0.134
6 1 12.022 -0.067 -0.018 -0.280 -0.112
7 1 13.031 -0.061 -0.015 -0.268 -0.099
8 1 13.050 -0.061 -0.015 -0.268 -0.099
9 1 13.719 -0.055 -0.012 -0.252 -0.090
I am trying to plot the positions vs. scores using:
chromosome.viewlinkage (narrow, chrom=1, type="layout", statistic = "lod",
with.X= TRUE, min.sat= -2, max.stat= 4, pheno.names = NULL, units = "cM", col
=1:6, ltyp= 1, lwd = 2, chromosome.cex= 0.9)
or
plot.scan (narrow, chrom=1, type="layout", statistic = "lod", with.X= TRUE,
min.sat= -2, max.stat= 4, pheno.names = NULL, units = "cM", col =1:6, ltyp= 1,
lwd = 2, chromosome.cex= 0.9)
I get this error message: Error in if (length(col) < ncol(stat)) { : argument
is of length zero.
Can you help me understand what I'm doing wrong?
Thanks
Shaza
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