Hello,
I am running randomForest models on a number of species. I would like to be
able to automate the printing of dependence plots for the most important
variables in each model, but I am unable to figure out how to enter the
variable names into my code. I had originally thought to extract them from
the $importance matrix after sorting by metric (e.g. %IncMSE), but the
importance matrix is n by 2 - containing only the data for each metric
(%IncMSE and IncNodePurity). It is clearly linked to the variable names,
but I am unsure how to extract those names for use in scripting. Any
assistance would be greatly appreciated as I am currently typing the
variable names into each partialPlot call for every model I run.....and that
is taking a LONG time.
Thanks!
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