Hi,
I have a question about filterMicroRna in AgiMicroRna package function for
filtering probes in Agilent microRNA dataset.
>ddPROC = filterMicroRna(ddNORM.micro, dd, control = TRUE, IsGeneDetected =
>TRUE, wellaboveNEG = FALSE, limIsGeneDetected = 75, limNEG = 25, makePLOT =
>TRUE, target.micro, verbose = TRUE)
If in a dataset there are two or more sample replicates and in the step of
filtering probes I want to exclude a probe only if gIsGeneDetected = 0 in all
two or three sample replicates.
I don't think by 'filterMicroRna' function provides any option for this type of
filtering.
Are there any suggestions ?
Thanks
Vickie S
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