Sorry, just realized I sent this to r help not r sig phylo which would
probably be more appropriate. Will re-post there - do ignore this.
On Mon, Jul 25, 2011 at 8:01 AM, Roland Sookias <r.sook...@gmail.com> wrote:
> Hi
>
> I'm trying to use ouch's hansen and brown functions but I get the error:
>
> > brown(logflatnodes,archotreeouch)
> Error in backsolve(l, x, k = k, upper.tri = upper.tri, transpose =
> transpose) :
> NA/NaN/Inf in foreign function call (arg 1)
>
> and with hansen also:
>
> Error in optim(par = c(sqrt.alpha, sigma), fn = function(par) { :
> function cannot be evaluated at initial parameters
>
> I'm not sure what I'm supposed to put in the sqrt.alpha and sigma
> parameters. I have several different selective regimes (trophic guilds). I
> have a single continuous character (body size). I read these data in as a
> table, and then made the columns into objects (or vectors? i.e. I did
> data2=allmydata$data2) and named them by node number. The tree is converted
> from ape.
>
> Thanks very much, and happy to provide more info...
>
> Traceback for the first error gives:
>
> >
> > traceback()
> 9: .C("bakslv", t = r, ldt = nrow(r), n = k, b = x, ldb = k, nb = nb,
> x = matrix(0, k, nb), job = job, info = integer(1L), DUP = FALSE,
> PACKAGE = "base")
> 8: backsolve(l, x, k = k, upper.tri = upper.tri, transpose = transpose)
> 7: forwardsolve(vh, a, upper.tri = TRUE, transpose = TRUE)
> 6: as.matrix(x)
> 5: svd(forwardsolve(vh, a, upper.tri = TRUE, transpose = TRUE))
> 4: glssoln(w, x, b)
> 3: FUN(X[[1L]], ...)
> 2: lapply(dat, function(x) glssoln(w, x, b))
> 1: brown(logflatnodes, archotreeouch)
> >
>
>
[[alternative HTML version deleted]]
______________________________________________
R-help@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
