Hi,
If you go to this site:
http://pngu.mgh.harvard.edu/~purcell/plink/res.shtml#teach
And download the teaching.zip file, I think there was information in
the word document about reading plink data into R, though I am not
100% sure. I think a read.table("filename.ped", header=T) command may
be enough. The word document is for plink beginners so it may not be
what you are looking for.
Tina
On Mon, Jun 20, 2011 at 11:32 PM, Jim Silverton <jim.silver...@gmail.com> wrote:
>
> I a using plink on a large SNP dataset with a .map and .ped file.
> I want to get some sort of file say a list of all the SNPs that plink is
> saying that I have. ANyideas on how to do this?
>
> --
> Thanks,
> Jim.
>
> [[alternative HTML version deleted]]
>
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