On 29/05/11 05:45, Jessica Minkue wrote:
Hello everyone
I really need some help here. I made a confidence ellipse using the function 
ellipse from the package ellipse:

ellipse(SD, centre=colMeans(pcsref),t=sqrt((p * (n-1)/(n-p))*qf(0.99, p,n-p))


Now, I want to write a function whom return TRUE or FALSE if a given 
observation is in the confidence ellipse. But I have no clue how to do it
Can anyone help me?

First of all, you are probably way off base talking about ***confidence*** ellipses here. If you are testing whether observations are inside the ellipses, then you are most
likely interested in ***prediction*** ellipses.

It is vital that you understand the difference.

But to answer your question:  It would be easy enough to do it from scratch.
Let your ellipse be defined by

    (x - mu)' M(x-mu) = c

where mu is the ``centre'', x is a 2-vector (x_1,x_2)', M is a positive definite matrix, c is a positive constant, and " ' " denotes ``transpose''. Then a point x = (x_1,x_2)' is
inside the ellipse if and only if (x - mu)' M(x-mu) <= c.

Coding this up is an easy exercise. If you can't do it, you probably shouldn't be messing
with this stuff in the first place.

However if you want to use a sledge-hammer to crack a peanut,
install the "spatstat" package and then do:

require(spatstat)
W <- owin(poly=<your ellipse>)
inside.owin(x1,x2,W) # Where x1 and x2 are the x and y coordinates of the points you wish to test.

    cheers,

        Rolf Turner

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