Dear Brian, Thank you very much for this answer. However ...
Le samedi 14 mai 2011 à 11:52 +0100, Prof Brian Ripley a écrit : > Note the difference in XML versions. > > odfWeave does not work correctly with XML 3.4-x: this has been > reported to the maintainer (and can be seen on the CRAN package checks > at http://cran.r-project.org/web/checks/check_results_odfWeave.html). > I suggest you try downgrading to an earlier version of XML. Do you mean the XML R package ? Or the libxml2 Debian package ? I am worried by the diference in behaviour of i386 and amd64 versions (and, on amd64, the discrepancies between Ubuntu 11.04 and Debian testing, which are easier to explain : Debian has slightly more recent version). I'll try to downgrade the R xml package (easier) and report results. Again, thank you very much ! Emmanuel Charpentier > On Sat, 14 May 2011, Emmanuel Charpentier wrote: > > > Dear list, > > > > This is a copy of a mail sent to Max Kuhn, original author and > > maintainer of the odfWeave package, which seems not to have received it. > > It reports a problem that seems to be very implementation specific > > (reproductible on three Debian testing amd64 machine, does *not* happen > > on two i686 Debian testing systems, does *not* happen on an Ubuntu 11.06 > > amd64 machine) and therefore not attributable to odfWeave itself (which > > is pure R) but to a software component it uses (XML and the underlying > > libxml2, R itself, etc ...), but I need to know how to track this > > problem. > > > > Apologies fror cross-posting to r-help and r-debian-sig, but I think > > that the issue is ... complicated and might not be as Debian-specific as > > it seems at first view. > > > > Sincerely, > > > > Emmanuel Charpentier > > > > Dear Max, > > > > A few days ago, I started to have problems with odfWeave 0.7.17 on a > > couple of amd64 systems : the compiled files contained numerous copies > > of the source files, more or less interlaced, "and a few copies of the > > target productions. > > > > Then I noticed that using an older 32-bit system resulted in correct > > files. An attempt with yet another machine (recent i686 netbook) > > confirmed that 32-bit systems gave okay results. > > > > Setup : in all machines, I use Debian testing with updates. My packages > > are self-compiled (i. e. installed via install.packages()). > > > > I enclose a very minimalist source and the resulting targets. Logs of > > execution on 32- and 64-bit systems are affixed after this message. > > > > Since odfWeave is pure R, I doubt that it could be the source of the > > problem. This leaves us with two obvious targets : R itself (the Debian > > package is current), or the XML library. > > > > Do you have any idea about how to proceed to find the source of the > > problem (and how to fix in) ? > > > > Sincerely, > > > > Emmanuel Charpentier > > > > Execution on a 32-bit system : > > > >> library(odfWeave) > > Le chargement a nécessité le package : lattice > > Le chargement a nécessité le package : XML > >> sessionInfo() > > R version 2.13.0 (2011-04-13) > > Platform: i486-pc-linux-gnu (32-bit) > > > > locale: > > [1] LC_CTYPE=fr_FR.utf8 LC_NUMERIC=C > > [3] LC_TIME=fr_FR.utf8 LC_COLLATE=fr_FR.utf8 > > [5] LC_MONETARY=C LC_MESSAGES=fr_FR.utf8 > > [7] LC_PAPER=fr_FR.utf8 LC_NAME=C > > [9] LC_ADDRESS=C LC_TELEPHONE=C > > [11] LC_MEASUREMENT=fr_FR.utf8 LC_IDENTIFICATION=C > > > > attached base packages: > > [1] stats graphics grDevices utils datasets methods base > > > > other attached packages: > > [1] odfWeave_0.7.17 XML_3.2-0 lattice_0.19-26 > > > > loaded via a namespace (and not attached): > > [1] grid_2.13.0 > >> system.time(odfWeave("In1.odt", "Out1-32.odt")) > > Copying In1.odt > > Setting wd to /tmp/RtmpS8lBt8/odfWeave11161739126 > > Unzipping ODF file using unzip -o In1.odt > > Archive: In1.odt > > extracting: mimetype > > creating: Configurations2/statusbar/ > > inflating: Configurations2/accelerator/current.xml > > creating: Configurations2/floater/ > > creating: Configurations2/popupmenu/ > > creating: Configurations2/progressbar/ > > creating: Configurations2/toolpanel/ > > creating: Configurations2/menubar/ > > creating: Configurations2/toolbar/ > > creating: Configurations2/images/Bitmaps/ > > inflating: content.xml > > inflating: manifest.rdf > > inflating: styles.xml > > extracting: meta.xml > > extracting: Thumbnails/thumbnail.png > > inflating: settings.xml > > inflating: META-INF/manifest.xml > > > > Removing In1.odt > > Creating a Pictures directory > > > > Pre-processing the contents > > Sweaving content.Rnw > > > > Writing to file content_1.xml > > Processing code chunks ... > > > > 'content_1.xml' has been Sweaved > > > > Removing content.xml > > > > Post-processing the contents > > Removing content.Rnw > > Removing styles.xml > > Renaming styles_2.xml to styles.xml > > Removing manifest.xml > > Renaming manifest_2.xml to manifest.xml > > Removing extra files > > > > Packaging file using zip -r In1.odt . > > adding: manifest.rdf (deflated 54%) > > adding: mimetype (stored 0%) > > adding: Pictures/ (stored 0%) > > adding: Configurations2/ (stored 0%) > > adding: Configurations2/images/ (stored 0%) > > adding: Configurations2/images/Bitmaps/ (stored 0%) > > adding: Configurations2/menubar/ (stored 0%) > > adding: Configurations2/progressbar/ (stored 0%) > > adding: Configurations2/toolbar/ (stored 0%) > > adding: Configurations2/floater/ (stored 0%) > > adding: Configurations2/accelerator/ (stored 0%) > > adding: Configurations2/accelerator/current.xml (stored 0%) > > adding: Configurations2/popupmenu/ (stored 0%) > > adding: Configurations2/toolpanel/ (stored 0%) > > adding: Configurations2/statusbar/ (stored 0%) > > adding: content.xml (deflated 75%) > > adding: META-INF/ (stored 0%) > > adding: META-INF/manifest.xml (deflated 83%) > > adding: Thumbnails/ (stored 0%) > > adding: Thumbnails/thumbnail.png (deflated 60%) > > adding: meta.xml (deflated 56%) > > adding: styles.xml (deflated 83%) > > adding: settings.xml (deflated 84%) > > Copying In1.odt > > Resetting wd > > Removing /tmp/RtmpS8lBt8/odfWeave11161739126 > > > > Done > > utilisateur système écoulé > > 0.448 0.020 0.568 > > > > Execution on a 64-bit system : > > > >> sessionInfo() > > R version 2.13.0 (2011-04-13) > > Platform: x86_64-pc-linux-gnu (64-bit) > > > > locale: > > [1] LC_CTYPE=fr_FR.UTF-8 LC_NUMERIC=C > > [3] LC_TIME=fr_FR.UTF-8 LC_COLLATE=fr_FR.UTF-8 > > [5] LC_MONETARY=C LC_MESSAGES=fr_FR.UTF-8 > > [7] LC_PAPER=fr_FR.UTF-8 LC_NAME=C > > [9] LC_ADDRESS=C LC_TELEPHONE=C > > [11] LC_MEASUREMENT=fr_FR.UTF-8 LC_IDENTIFICATION=C > > > > attached base packages: > > [1] stats graphics grDevices utils datasets methods base > > > > other attached packages: > > [1] odfWeave_0.7.17 XML_3.4-0 lattice_0.19-26 > > > > loaded via a namespace (and not attached): > > [1] grid_2.13.0 > >> system.time(odfWeave("In1.odt", "Out1-64.odt")) > > Copying In1.odt > > Setting wd to /tmp/Rtmpfw3Ow2/odfWeave11162204556 > > Unzipping ODF file using unzip -o In1.odt > > Archive: In1.odt > > extracting: mimetype > > creating: Configurations2/statusbar/ > > inflating: Configurations2/accelerator/current.xml > > creating: Configurations2/floater/ > > creating: Configurations2/popupmenu/ > > creating: Configurations2/progressbar/ > > creating: Configurations2/toolpanel/ > > creating: Configurations2/menubar/ > > creating: Configurations2/toolbar/ > > creating: Configurations2/images/Bitmaps/ > > inflating: content.xml > > inflating: manifest.rdf > > inflating: styles.xml > > extracting: meta.xml > > extracting: Thumbnails/thumbnail.png > > inflating: settings.xml > > inflating: META-INF/manifest.xml > > > > Removing In1.odt > > Creating a Pictures directory > > > > Pre-processing the contents > > Sweaving content.Rnw > > > > Writing to file content_1.xml > > Processing code chunks ... > > > > 'content_1.xml' has been Sweaved > > > > Removing content.xml > > > > Post-processing the contents > > Removing content.Rnw > > Removing styles.xml > > Renaming styles_2.xml to styles.xml > > Removing manifest.xml > > Renaming manifest_2.xml to manifest.xml > > Removing extra files > > > > Packaging file using zip -r In1.odt . > > adding: manifest.rdf (deflated 54%) > > adding: Configurations2/ (stored 0%) > > adding: Configurations2/toolpanel/ (stored 0%) > > adding: Configurations2/images/ (stored 0%) > > adding: Configurations2/images/Bitmaps/ (stored 0%) > > adding: Configurations2/progressbar/ (stored 0%) > > adding: Configurations2/popupmenu/ (stored 0%) > > adding: Configurations2/statusbar/ (stored 0%) > > adding: Configurations2/menubar/ (stored 0%) > > adding: Configurations2/floater/ (stored 0%) > > adding: Configurations2/accelerator/ (stored 0%) > > adding: Configurations2/accelerator/current.xml (stored 0%) > > adding: Configurations2/toolbar/ (stored 0%) > > adding: content.xml (deflated 98%) > > adding: mimetype (stored 0%) > > adding: Pictures/ (stored 0%) > > adding: settings.xml (deflated 84%) > > adding: META-INF/ (stored 0%) > > adding: META-INF/manifest.xml (deflated 83%) > > adding: meta.xml (deflated 56%) > > adding: Thumbnails/ (stored 0%) > > adding: Thumbnails/thumbnail.png (deflated 60%) > > adding: styles.xml (deflated 92%) > > Copying In1.odt > > Resetting wd > > Removing /tmp/Rtmpfw3Ow2/odfWeave11162204556 > > > > Done > > utilisateur système écoulé > > 0.756 0.012 0.775 > > > > One could note that the user time is almost double of the 32-bit system > > system time, notwhistanding the fact that the 64-bit system is about 10x > > faster than the 32-bit system. > > > > > > -- > Brian D. Ripley, rip...@stats.ox.ac.uk > Professor of Applied Statistics, http://www.stats.ox.ac.uk/~ripley/ > University of Oxford, Tel: +44 1865 272861 (self) > 1 South Parks Road, +44 1865 272866 (PA) > Oxford OX1 3TG, UK Fax: +44 1865 272595 ______________________________________________ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
