On 05/08/2011 02:15 PM, Helga Garcia wrote:
Dear all,
We have developed our own Affymetrix chip (Custom Express Array, PM-only
with two species).
I want to analyse the data with the limma package, but for that I need to
built my own CDF package,
probe package and built the filters to analyse one specie or another.
I'm using the makeProbePackage available in the AnnotationDbi (for a
R-2.13.0) but I got the following error message:
Error in rep(NA, max(pm1, mm1, pm2, mm2)) : invalid 'times' argument
I already tried an old version of R-2.9.1 with a package matchprobes (that
is no longer update for R-2.13.0)
but the same error occurs.
Does anyone knows how could I overcome this problem?
Hi Helga -- Please ask this question on the Bioconductor mailing list,
where you will get expert advice.
http://bioconductor.org/help/mailing-list/
Be sure that your packages are up-to-date
http://bioconductor.org/install/
and that you include the output of sessionInfo() in your post.
Martin
Thank you very much for your attention.
Best Regards,
Helga
--
Computational Biology
Fred Hutchinson Cancer Research Center
1100 Fairview Ave. N. PO Box 19024 Seattle, WA 98109
Location: M1-B861
Telephone: 206 667-2793
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