The plot works fine for me with the example data you have given. Maybe it is something in your par settings. Try putting a ylim in your plot the same as you have done for the xlim:
y1<-min(original.estimate) y2<-max(original.estimate) plot(lfdr.true, original.estimate, pch=19, col = "dark red",xlim = c(x1,x2),ylim=c(y1,y2)) ______________________________________________ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
