Hi all,
Within a foreach loop with doSNOW, we cant call functions which come from
the non-default package. We need to load(require/library) the package once
more within the foreach loop. Anyone knows why would happen like this? Is it
caused by the snow package and something happened when "snow" parallelize
the job?
Other than load the package once more with in the foreach loop, is there any
other solutions?
Here's an example about what i said:
# install.packages("lmtest")
# install.packages("doSNOW")
require(lmtest)
require(foreach)
require(doSNOW)
rm(list=ls(all=TRUE))
# load the data
data(Mandible)
# run the OLS and compute the SD
# no problem at all
coeftest(lm(length ~ age, data=Mandible, subset=(age <= 28)))
# Do the same thing twice with foreach
# no problem at all
foreach(i=1:2) %do% {
coeftest(lm(length ~ age, data=Mandible, subset=(age <= 28)))
}
# Do the same thing twice with foreach and doSNOW
# it fails!! the error msg was (could not find function "coeftest")
cl<-makeCluster(2)
registerDoSNOW(cl)
foreach(i=1:2) %dopar% {
coeftest(lm(length ~ age, data=Mandible, subset=(age <= 28)))
}
stopCluster(cl)
# However if i put require(lmtest) inside the foreach loop, it works again!
cl<-makeCluster(2)
registerDoSNOW(cl)
foreach(i=1:2) %dopar% {
require(lmtest)
coeftest(lm(length ~ age, data=Mandible, subset=(age <= 28)))
}
stopCluster(cl)
Regards,
Julian
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