Thanks guys, I had to change two things to get it to work: 1. As Dennis pointed out, all of the variables in the model had to be variable names in the preds data frame. 2. I had to use na.pass in the following statement to be able to merge the predicted values with the preds data frame because of all the NAs among the predicted values: preds$predicted <- predict(lmemodel, preds, na.action=na.pass)
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